Evidence map›Paper›PMID 29180611›Full record

ArticleMolecular systems biology2017

Screening drug effects in patient-derived cancer cells links organoid responses to genome alterations.

Julia Jabs, Franziska M Zickgraf, Jeongbin Park, Steve Wagner, Xiaoqi Jiang, Katharina Jechow, Kortine Kleinheinz, Umut H Toprak, Marc A Schneider, Michael Meister and 7 more

Abstract read
In one paragraph

Article in Molecular systems biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed.

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  12. Multiscale Construction, Evaluation, and Application of Organoids.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  13. Article
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64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Julia JabsDivision of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany.ORCID 0000-0002-4915-9966
Franziska M ZickgrafHeidelberg Institute for Stem Cell Technology and Experimental Medicine (HI-STEM) gGmbH, Heidelberg, Germany.ORCID 0000-0003-4269-1316
Jeongbin ParkDivision of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany.ORCID 0000-0002-9064-4912
Steve WagnerHeidelberg Institute for Stem Cell Technology and Experimental Medicine (HI-STEM) gGmbH, Heidelberg, Germany.
Xiaoqi JiangDivision of Biostatistics, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Katharina JechowDivision of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Kortine KleinheinzDivision of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany.ORCID 0000-0002-1859-2281
Umut H ToprakDivision of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Marc A SchneiderThoraxklinik at Heidelberg University Hospital, Member of the German Center for Lung Research (DZL), Heidelberg, Germany.ORCID 0000-0001-8269-3821
Michael MeisterThoraxklinik at Heidelberg University Hospital, Member of the German Center for Lung Research (DZL), Heidelberg, Germany.
Saskia SpaichDepartment of Gynaecology and Obstetrics, University Medical Centre Mannheim, University of Heidelberg, Mannheim, Germany.
Marc SütterlinDepartment of Gynaecology and Obstetrics, University Medical Centre Mannheim, University of Heidelberg, Mannheim, Germany.ORCID 0000-0003-0205-2552
Matthias SchlesnerDivision of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany.ORCID 0000-0002-5896-4086
Andreas TrumppHeidelberg Institute for Stem Cell Technology and Experimental Medicine (HI-STEM) gGmbH, Heidelberg, Germany.
Martin SprickHeidelberg Institute for Stem Cell Technology and Experimental Medicine (HI-STEM) gGmbH, Heidelberg, Germany.ORCID 0000-0001-9691-7574
Roland EilsDivision of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany r.eils@dkfz.de c.conrad@dkfz.de.ORCID 0000-0002-0034-4036
Christian ConradDivision of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany r.eils@dkfz.de c.conrad@dkfz.de.ORCID 0000-0001-7036-342X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cancer drug screening in patient-derived cells holds great promise for personalized oncology and drug discovery but lacks standardization. Whether cells are cultured as conventional monolayer or advanced, matrix-dependent organoid cultures influences drug effects and thereby drug selection and clinical success. To precisely compare drug profiles in differently cultured primary cells, we developed

Indexed as

GenomeAnimalsAntineoplastic AgentsAutomation, LaboratoryBiological AssayCell DeathCell Line, TumorCell ProliferationCystadenocarcinoma, SerousDNA DamageDNA RepairDrug Screening Assays, AntitumorEpithelial CellsFemaleHumansMiceAntineoplastic Agentscancer organoidsconfocal microscopyhigh‐throughput screeningpersonalized drug screenpharmacogenomics

Identifiers

PMID29180611
PMCPMC5731348

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.