Evidence map›Paper›PMID 29180426›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Proton movement and coupling in the POT family of peptide transporters.

Joanne L Parker, Chenghan Li, Allete Brinth, Zhi Wang, Lutz Vogeley, Nicolae Solcan, Gregory Ledderboge-Vucinic, Jessica M J Swanson, Martin Caffrey, Gregory A Voth and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
4.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 99 citations in OpenAlex.

  1. Article
  2. Article
  3. Human Body Malodor and Deodorants: The Present and the Future.International journal of molecular sciences · 2025
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Orphan lysosomal solute carrier MFSD1 facilitates highly selective dipeptide transport.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Bactericidal Properties of Proline-RichLife (Basel, Switzerland) · 2022
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Joanne L ParkerDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom; joanne.parker@bioch.ox.ac.uk jmswanson@uchicago.edu simon.newstead@bioch.ox.ac.uk.
Chenghan LiDepartment of Chemistry, The University of Chicago, Chicago, IL 60637.
Allete BrinthSchool of Medicine, Trinity College Dublin, Dublin, Ireland.
Zhi WangDepartment of Chemistry, The University of Chicago, Chicago, IL 60637.
Lutz VogeleySchool of Medicine, Trinity College Dublin, Dublin, Ireland.
Nicolae SolcanDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom.
Gregory Ledderboge-VucinicDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom.
Jessica M J SwansonDepartment of Chemistry, The University of Chicago, Chicago, IL 60637; joanne.parker@bioch.ox.ac.uk jmswanson@uchicago.edu simon.newstead@bioch.ox.ac.uk.
Martin CaffreySchool of Medicine, Trinity College Dublin, Dublin, Ireland.
Gregory A VothDepartment of Chemistry, The University of Chicago, Chicago, IL 60637.
Simon NewsteadDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom; joanne.parker@bioch.ox.ac.uk jmswanson@uchicago.edu simon.newstead@bioch.ox.ac.uk.ORCID 0000-0001-7432-2270
University of Chicago · USUniversity of Oxford · GBTrinity College Dublin · IE

Funding

SIMULATIONS OF PROTON TRANSLOCATION IN BIOMOLECULESR01GM053148 · NIGMS · UNIVERSITY OF UTAH · PI VOTH, GREGORY A. · 1996 to 2021
$5.3M
Medical Research Council G0900399NIGMS NIH HHS R01 GM053148Wellcome TrustWellcome Trust 102890/Z/13/Z
6 · The paper itself

Abstract

POT transporters represent an evolutionarily well-conserved family of proton-coupled transport systems in biology. An unusual feature of the family is their ability to couple the transport of chemically diverse ligands to an inwardly directed proton electrochemical gradient. For example, in mammals, fungi, and bacteria they are predominantly peptide transporters, whereas in plants the family has diverged to recognize nitrate, plant defense compounds, and hormones. Although recent structural and biochemical studies have identified conserved sites of proton binding, the mechanism through which transport is coupled to proton movement remains enigmatic. Here we show that different POT transporters operate through distinct proton-coupled mechanisms through changes in the extracellular gate. A high-resolution crystal structure reveals the presence of ordered water molecules within the peptide binding site. Multiscale molecular dynamics simulations confirm proton transport occurs through these waters via Grotthuss shuttling and reveal that proton binding to the extracellular side of the transporter facilitates a reorientation from an inward- to outward-facing state. Together these results demonstrate that within the POT family multiple mechanisms of proton coupling have likely evolved in conjunction with variation of the extracellular gate.

Indexed as

ProtonsBacterial ProteinsBinding SitesMembrane Transport ProteinsMolecular Dynamics SimulationPeptidesProtein BindingXanthomonasBacterial ProteinsMembrane Transport ProteinsPeptidesProtonsbiophysicsmajor facilitator superfamilymembrane transportpeptide transportproton movement

Identifiers

PMID29180426
PMCPMC5740623
OpenAlexW2769205803

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.