Evidence map›Paper›PMID 29177184›Full record

ArticleBio-protocol2017

Overrepresentation Analyses of Differentially Expressed Genes in the Smut Fungus

Angelika Czedik-Eysenberg, Franziska Rabe, Heinz Ekker, Carmen Czepe, Armin Djamei

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Bio-protocol, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Angelika Czedik-EysenbergGregor Mendel Institute, Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr. Bohr-Gasse 3, 1030 Vienna, Austria.
Franziska RabeGregor Mendel Institute, Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr. Bohr-Gasse 3, 1030 Vienna, Austria.
Heinz EkkerVienna Biocenter Core Facilities (VBCF), Vienna Biocenter (VBC), Dr. Bohr-Gasse 3, 1030 Vienna, Austria.
Carmen CzepeVienna Biocenter Core Facilities (VBCF), Vienna Biocenter (VBC), Dr. Bohr-Gasse 3, 1030 Vienna, Austria.
Armin DjameiGregor Mendel Institute, Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr. Bohr-Gasse 3, 1030 Vienna, Austria.

Funding

Austrian Science Fund FWF I 3033Austrian Science Fund FWF P 27429Austrian Science Fund FWF P 27818European Research Council 335691
6 · The paper itself

Abstract

We have established the

Indexed as

Biotrophic plant pathogensDifferential expressionFungal pathogensover/under representation analysisPlant infectionRNA-seqSmutsUstilago bromivora

Identifiers

PMID29177184
PMCPMC5701736

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.