Evidence map›Paper›PMID 29176703›Full record

ArticleNature communications2017

NSD1- and NSD2-damaging mutations define a subset of laryngeal tumors with favorable prognosis.

Suraj Peri, Evgeny Izumchenko, Adrian D Schubert, Michael J Slifker, Karen Ruth, Ilya G Serebriiskii, Theresa Guo, Barbara A Burtness, Ranee Mehra, Eric A Ross and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Review
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  14. The role of NSD1, NSD2, and NSD3 histone methyltransferases in solid tumors.Cellular and molecular life sciences : CMLS · 2022
    Review
  15. Association of TP53 and CDKN2A Mutation Profile with Tumor Mutation Burden in Head and Neck Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2022
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Suraj PeriBiostatistics and Bioinformatics Division, Fox Chase Cancer Center, Philadelphia, 19111, PA, USA. suraj.peri@fccc.edu.
Evgeny IzumchenkoDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.
Adrian D SchubertDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.ORCID http://orcid.org/0000-0002-7316-2727
Michael J SlifkerBiostatistics and Bioinformatics Division, Fox Chase Cancer Center, Philadelphia, 19111, PA, USA.
Karen RuthBiostatistics and Bioinformatics Division, Fox Chase Cancer Center, Philadelphia, 19111, PA, USA.
Ilya G SerebriiskiiMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Theresa GuoDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.
Barbara A BurtnessDepartment of Internal Medicine and Developmental Therapeutics Program, Yale Cancer Center, Yale School of Medicine, Yale University, New Haven, CT, 06520, USA.
Ranee MehraDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.
Eric A RossBiostatistics and Bioinformatics Division, Fox Chase Cancer Center, Philadelphia, 19111, PA, USA.
David SidranskyDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA.
Erica A GolemisMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA. Erica.golemis@fccc.edu.ORCID http://orcid.org/0000-0003-3618-3673

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI CHARNITA M. ZEIGLER-JOHNSON · 1985 to 2026
$138.8M
Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
TUMOR SUPPRESOR GENE PROMOTER HYPERMETHYLATION FOR DETECTION OF HEAD AND NECKP50DE019032 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI SIDRANSKY, DAVID · 2007 to 2016
$27.1M
A Role for AMH Autocrine Signaling in NSCLCR21CA181287 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI GOLEMIS, ERICA A. · 2014 to 2015
$421k
NCATS NIH HHS UL1 TR001863NCI NIH HHS P30 CA006927NCI NIH HHS R21 CA181287NIDCR NIH HHS P50 DE019032
6 · The paper itself

Abstract

Squamous cell carcinomas of the head and neck (SCCHN) affect anatomical sites including the oral cavity, nasal cavity, pharynx, and larynx. Laryngeal cancers are characterized by high recurrence and poor overall survival, and currently lack robust molecular prognostic biomarkers for treatment stratification. Using an algorithm for integrative clustering that simultaneously assesses gene expression, somatic mutation, copy number variation, and methylation, we for the first time identify laryngeal cancer subtypes with distinct prognostic outcomes, and differing from the non-prognostic laryngeal subclasses reported by The Cancer Genome Atlas (TCGA). Although most common laryngeal gene mutations are found in both subclasses, better prognosis is strongly associated with damaging mutations of the methyltransferases NSD1 and NSD2, with findings confirmed in an independent validation cohort consisting of 63 laryngeal cancer patients. Intriguingly, NSD1/2 mutations are not prognostic for nonlaryngeal SCCHN. These results provide an immediately useful clinical metric for patient stratification and prognostication.

Indexed as

MutationAdultAgedAged, 80 and overCohort StudiesFemaleGene Expression Regulation, NeoplasticHistone-Lysine N-MethyltransferaseHistone MethyltransferasesHumansIntracellular Signaling Peptides and ProteinsLaryngeal NeoplasmsMaleMiddle AgedNuclear ProteinsPrognosisHistone-Lysine N-MethyltransferaseHistone MethyltransferasesIntracellular Signaling Peptides and ProteinsNSD1 protein, humanNSD2 protein, humanNuclear ProteinsRepressor Proteins

Identifiers

PMID29176703
PMCPMC5701248

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.