Evidence map›Paper›PMID 29176576›Full record

ArticleNature communications2017

The activity of TRAF RING homo- and heterodimers is regulated by zinc finger 1.

Adam J Middleton, Rhesa Budhidarmo, Anubrita Das, Jingyi Zhu, Martina Foglizzo, Peter D Mace, Catherine L Day

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 56 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. TRAF6 coiled-coil domain mediates its trimerization.bioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Chemical Tools for Probing the Ub/Ubl Conjugation Cascades.Chembiochem : a European journal of chemical biology · 2025
    Review
  8. Article
  9. TIFAB regulates the TIFA-TRAF6 signaling pathway involved in innate immunity by forming a heterodimer complex with TIFA.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. Article
  12. From seeds to trees: how E2 enzymes grow ubiquitin chains.Biochemical Society transactions · 2023
    Review
  13. Article
  14. FcγRs and Their Relevance for the Activity of Anti-CD40 Antibodies.International journal of molecular sciences · 2022
    Review
  15. Article
  16. Article
  17. Article
  18. Mechanistic dissection of spatial organization in NF-κB signaling pathways by hybrid simulations.Integrative biology : quantitative biosciences from nano to macro · 2021
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Adam J MiddletonDepartment of Biochemistry, School of Biomedical Sciences, University of Otago, Dunedin, 9054, New Zealand.ORCID http://orcid.org/0000-0002-6075-4061
Rhesa BudhidarmoDepartment of Biochemistry, School of Biomedical Sciences, University of Otago, Dunedin, 9054, New Zealand.
Anubrita DasDepartment of Biochemistry, School of Biomedical Sciences, University of Otago, Dunedin, 9054, New Zealand.
Jingyi ZhuDepartment of Biochemistry, School of Biomedical Sciences, University of Otago, Dunedin, 9054, New Zealand.
Martina FoglizzoDepartment of Biochemistry, School of Biomedical Sciences, University of Otago, Dunedin, 9054, New Zealand.ORCID http://orcid.org/0000-0001-9132-4737
Peter D MaceDepartment of Biochemistry, School of Biomedical Sciences, University of Otago, Dunedin, 9054, New Zealand.ORCID http://orcid.org/0000-0003-2175-9537
Catherine L DayDepartment of Biochemistry, School of Biomedical Sciences, University of Otago, Dunedin, 9054, New Zealand. catherine.day@otago.ac.nz.ORCID http://orcid.org/0000-0003-1571-4367
University of Otago · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ubiquitin chains linked through lysine63 (K63) play a critical role in inflammatory signalling. Following ligand engagement of immune receptors, the RING E3 ligase TRAF6 builds K63-linked chains together with the heterodimeric E2 enzyme Ubc13-Uev1A. Dimerisation of the TRAF6 RING domain is essential for the assembly of K63-linked ubiquitin chains. Here, we show that TRAF6 RING dimers form a catalytic complex where one RING interacts with a Ubc13~Ubiquitin conjugate, while the zinc finger 1 (ZF1) domain and linker-helix of the opposing monomer contact ubiquitin. The RING dimer interface is conserved across TRAFs and we also show that TRAF5-TRAF6 heterodimers form. Importantly, TRAF5 can provide ZF1, enabling ubiquitin transfer from a TRAF6-bound Ubc13 conjugate. Our study explains the dependence of activity on TRAF RING dimers, and suggests that both homo- and heterodimers mediated by TRAF RING domains have the capacity to synthesise ubiquitin chains.

Indexed as

HumansIntracellular Signaling Peptides and ProteinsProtein MultimerizationRING Finger DomainsTNF Receptor-Associated Factor 5TNF Receptor-Associated Factor 6Transcription FactorsUbiquitinUbiquitinationUbiquitin-Conjugating EnzymesIntracellular Signaling Peptides and ProteinsTifab protein, humanTNF Receptor-Associated Factor 5TNF Receptor-Associated Factor 6TRAF5 protein, humanTranscription FactorsUBE2N protein, humanUBE2V1 protein, humanUbiquitinUbiquitin-Conjugating Enzymes

Identifiers

PMID29176576
PMCPMC5702613
OpenAlexW2769262550

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.