Evidence map›Paper›PMID 29175107›Full record

ReviewVirus research2018

Viruses of archaea: Structural, functional, environmental and evolutionary genomics.

Mart Krupovic, Virginija Cvirkaite-Krupovic, Jaime Iranzo, David Prangishvili, Eugene V Koonin

Abstract readReview
In one paragraph

Review in Virus research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 122 papers.

0numbers the graph read from it
0cells of the map it votes in
122citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

122 citing papers in PubMed.

  1. Article
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  3. Review
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  11. Review
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  15. Article
  16. Virus nanotechnology for intratumoural immunotherapy.Nature reviews bioengineering · 2024
    Article
  17. Article
  18. ICTV Virus Taxonomy Profile:The Journal of general virology · 2024
    Article
  19. Article
  20. Identification and characterization of integrated prophages and CRISPR-Cas system in Bacillus subtilis RS10 genome.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article

62 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mart KrupovicDepartment of Microbiology, Institut Pasteur, 25 rue du Dr. Roux, Paris 75015, Paris, France. Electronic address: krupovic@pasteur.fr.
Virginija Cvirkaite-KrupovicDepartment of Microbiology, Institut Pasteur, 25 rue du Dr. Roux, Paris 75015, Paris, France.
Jaime IranzoNational Center for Biotechnology Information, National Library of Medicine, Bethesda, MD, USA.
David PrangishviliDepartment of Microbiology, Institut Pasteur, 25 rue du Dr. Roux, Paris 75015, Paris, France.
Eugene V KooninNational Center for Biotechnology Information, National Library of Medicine, Bethesda, MD, USA.

Funding

Comparative Analysis Of Completely Sequenced GenomesZIALM000073 · NLM · NATIONAL LIBRARY OF MEDICINE · PI KOONIN, EUGENE V · 2009 to 2025
$43.1M
Finding Protein Sequence Motifs--Methods And ApplicationsZIALM000061 · NLM · NATIONAL LIBRARY OF MEDICINE · PI KOONIN, EUGENE V · 2009 to 2025
$10.6M
COMPARATIVE ANALYSIS OF COMPLETELY SEQUENCED GENOMESZ01LM000073 · NLM · NATIONAL LIBRARY OF MEDICINE · PI KOONIN, EUGENE V · 1996 to 2008
$1.2M
Intramural NIH HHS Z01 LM000073
6 · The paper itself

Abstract

Viruses of archaea represent one of the most enigmatic parts of the virosphere. Most of the characterized archaeal viruses infect extremophilic hosts and display remarkable diversity of virion morphotypes, many of which have never been observed among viruses of bacteria or eukaryotes. The uniqueness of the virion morphologies is matched by the distinctiveness of the genomes of these viruses, with ∼75% of genes encoding unique proteins, refractory to functional annotation based on sequence analyses. In this review, we summarize the state-of-the-art knowledge on various aspects of archaeal virus genomics. First, we outline how structural and functional genomics efforts provided valuable insights into the functions of viral proteins and revealed intricate details of the archaeal virus-host interactions. We then highlight recent metagenomics studies, which provided a glimpse at the diversity of uncultivated viruses associated with the ubiquitous archaea in the oceans, including Thaumarchaeota, Marine Group II Euryarchaeota, and others. These findings, combined with the recent discovery that archaeal viruses mediate a rapid turnover of thaumarchaea in the deep sea ecosystems, illuminate the prominent role of these viruses in the biosphere. Finally, we discuss the origins and evolution of archaeal viruses and emphasize the evolutionary relationships between viruses and non-viral mobile genetic elements. Further exploration of the archaeal virus diversity as well as functional studies on diverse virus-host systems are bound to uncover novel, unexpected facets of the archaeal virome.

Indexed as

Genome, ViralPhylogenyAquatic OrganismsArchaeaArchaeal VirusesEvolution, MolecularGenetic VariationInterspersed Repetitive SequencesMetagenomicsMicrobial InteractionsSequence Analysis, DNAViral ProteinsVirionViral Proteins

Identifiers

PMID29175107
PMCPMC5801132

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.