ArticleGenetica2018
The complete chloroplast genome sequence of Dodonaea viscosa: comparative and phylogenetic analyses.
Article in Genetica, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
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Who cites it
35 citing papers in PubMed.
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- Comparative analysis of the complete chloroplast genome of Pueraria provides insights for species identification, phylogenetic relationships, and taxonomy.BMC plant biology · 2024Article
- Pan-Chloroplast Genomes Reveal the Accession-Specific Marker forInternational journal of molecular sciences · 2024Article
- The chloroplast genomes of two medicinal species (Veronica anagallis-aquatica L. and Veronica undulata Wall.) and its comparative analysis with related Veronica species.Scientific reports · 2024Article
- The complete chloroplast genome sequence ofMitochondrial DNA. Part B, Resources · 2024Article
- Comprehensive analysis of complete chloroplast genome sequence ofPlant signaling & behavior · 2023Article
- Genomic exploration of Sesuvium sesuvioides: comparative study and phylogenetic analysis within the order Caryophyllales from Cholistan desert, Pakistan.BMC plant biology · 2023Article
- Chloroplast genome assembly ofFrontiers in plant science · 2023Article
- The complete chloroplast genome sequences of six Hylotelephium species: Comparative genomic analysis and phylogenetic relationships.PloS one · 2023Article
- Chloroplast genome skimming of a potential agroforestry species3 Biotech · 2023Article
- The complete chloroplast genome of two Firmiana species and comparative analysis with other related species.Genetica · 2022Article
- The chloroplast genome of Farsetia hamiltonii Royle, phylogenetic analysis, and comparative study with other members of Clade C of Brassicaceae.BMC plant biology · 2022Article
- The analysis of genetic structure and characteristics of the chloroplast genome in different Japanese apricot germplasm populations.BMC plant biology · 2022Article
- Complete chloroplast genome features of the model heavy metal hyperaccumulatorPhysiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
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6 authors.
Funding
Abstract
The plant chloroplast (cp) genome is a highly conserved structure which is beneficial for evolution and systematic research. Currently, numerous complete cp genome sequences have been reported due to high throughput sequencing technology. However, there is no complete chloroplast genome of genus Dodonaea that has been reported before. To better understand the molecular basis of Dodonaea viscosa chloroplast, we used Illumina sequencing technology to sequence its complete genome. The whole length of the cp genome is 159,375 base pairs (bp), with a pair of inverted repeats (IRs) of 27,099 bp separated by a large single copy (LSC) 87,204 bp, and small single copy (SSC) 17,972 bp. The annotation analysis revealed a total of 115 unique genes of which 81 were protein coding, 30 tRNA, and four ribosomal RNA genes. Comparative genome analysis with other closely related Sapindaceae members showed conserved gene order in the inverted and single copy regions. Phylogenetic analysis clustered D. viscosa with other species of Sapindaceae with strong bootstrap support. Finally, a total of 249 SSRs were detected. Moreover, a comparison of the synonymous (Ks) and nonsynonymous (Ka) substitution rates in D. viscosa showed very low values. The availability of cp genome reported here provides a valuable genetic resource for comprehensive further studies in genetic variation, taxonomy and phylogenetic evolution of Sapindaceae family. In addition, SSR markers detected will be used in further phylogeographic and population structure studies of the species in this genus.
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