Evidence map›Paper›PMID 29170488›Full record

ArticleNature communications2017

Heme enables proper positioning of Drosha and DGCR8 on primary microRNAs.

Alexander C Partin, Tri D Ngo, Emily Herrell, Byung-Cheon Jeong, Gary Hon, Yunsun Nam

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. The biogenesis and regulation of animal microRNAs.Nature reviews. Molecular cell biology · 2025
    Review
  8. Article
  9. The structural landscape of Microprocessor mediated pri-bioRxiv : the preprint server for biology · 2024
    Article
  10. Article
  11. Review
  12. Gas-sensing riboceptors.RNA biology · 2024
    Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Dynamic Protein-RNA recognition in primary MicroRNA processing.Current opinion in structural biology · 2022
    Review
  20. Regulation of protein function and degradation by heme, heme responsive motifs, and CO.Critical reviews in biochemistry and molecular biology · 2022
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Alexander C PartinCecil H. and Ida Green Center for Reproductive Biology Sciences and Division of Basic Reproductive Biology Research, Department of Obstetrics and Gynecology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Tri D NgoCecil H. and Ida Green Center for Reproductive Biology Sciences and Division of Basic Reproductive Biology Research, Department of Obstetrics and Gynecology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Emily HerrellCecil H. and Ida Green Center for Reproductive Biology Sciences and Division of Basic Reproductive Biology Research, Department of Obstetrics and Gynecology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Byung-Cheon JeongCecil H. and Ida Green Center for Reproductive Biology Sciences and Division of Basic Reproductive Biology Research, Department of Obstetrics and Gynecology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Gary HonCecil H. and Ida Green Center for Reproductive Biology Sciences and Division of Basic Reproductive Biology Research, Department of Obstetrics and Gynecology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Yunsun NamCecil H. and Ida Green Center for Reproductive Biology Sciences and Division of Basic Reproductive Biology Research, Department of Obstetrics and Gynecology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA. yunsun.nam@utsouthwestern.edu.ORCID http://orcid.org/0000-0002-7939-8626
The University of Texas Southwestern Medical Center · USSouthwestern Medical Center · US

Funding

Mechanisms of Microprocessor Function and RegulationR01GM122960 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI NAM, YUNSUN · 2017 to 2025
$3.2M
NIGMS NIH HHS R01 GM122960
6 · The paper itself

Abstract

MicroRNAs regulate the expression of many proteins and require specific maturation steps. Primary microRNA transcripts (pri-miRs) are cleaved by Microprocessor, a complex containing the RNase Drosha and its partner protein, DGCR8. Although DGCR8 is known to bind heme, the molecular role of heme in pri-miR processing is unknown. Here we show that heme is critical for Microprocessor to process pri-miRs with high fidelity. Furthermore, the degree of inherent heme dependence varies for different pri-miRs. Heme-dependent pri-miRs fail to properly recruit Drosha, but heme-bound DGCR8 can correct erroneous binding events. Rather than changing the oligomerization state, heme induces a conformational change in DGCR8. Finally, we demonstrate that heme activates DGCR8 to recognize pri-miRs by specifically binding the terminal loop near the 3' single-stranded segment.

Indexed as

Amino Acid SubstitutionBase SequenceHEK293 CellsHemeHumansMicroRNAsModels, BiologicalModels, MolecularMutant ProteinsNucleic Acid ConformationProtein BindingProtein ConformationProtein Interaction Domains and MotifsRibonuclease IIIRNA-Binding ProteinsRNA Processing, Post-TranscriptionalDGCR8 protein, humanDROSHA protein, humanHemeMicroRNAsMutant ProteinsRibonuclease IIIRNA-Binding Proteins

Identifiers

PMID29170488
PMCPMC5700927
OpenAlexW2769158750

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.