Evidence map›Paper›PMID 29168636›Full record

ArticleThe Journal of organic chemistry2018

A Synthetic Isoprenoid Lipoquinone, Menaquinone-2, Adopts a Folded Conformation in Solution and at a Model Membrane Interface.

Jordan T Koehn, Estela S Magallanes, Benjamin J Peters, Cheryle N Beuning, Allison A Haase, Michelle J Zhu, Christopher D Rithner, Dean C Crick, Debbie C Crans

Abstract read
In one paragraph

Article in The Journal of organic chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Interactions of Truncated Menaquinones in Lipid Monolayers and Bilayers.International journal of molecular sciences · 2021
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Jordan T KoehnChemistry Department, ‡Cell and Molecular Biology Program, and §Microbiology, Immunology, and Pathology Department, Colorado State University , Fort Collins, Colorado 80523, United States.ORCID 0000-0003-3008-6303
Estela S MagallanesChemistry Department, ‡Cell and Molecular Biology Program, and §Microbiology, Immunology, and Pathology Department, Colorado State University , Fort Collins, Colorado 80523, United States.
Benjamin J PetersChemistry Department, ‡Cell and Molecular Biology Program, and §Microbiology, Immunology, and Pathology Department, Colorado State University , Fort Collins, Colorado 80523, United States.
Cheryle N BeuningChemistry Department, ‡Cell and Molecular Biology Program, and §Microbiology, Immunology, and Pathology Department, Colorado State University , Fort Collins, Colorado 80523, United States.
Allison A HaaseChemistry Department, ‡Cell and Molecular Biology Program, and §Microbiology, Immunology, and Pathology Department, Colorado State University , Fort Collins, Colorado 80523, United States.
Michelle J ZhuChemistry Department, ‡Cell and Molecular Biology Program, and §Microbiology, Immunology, and Pathology Department, Colorado State University , Fort Collins, Colorado 80523, United States.
Christopher D RithnerChemistry Department, ‡Cell and Molecular Biology Program, and §Microbiology, Immunology, and Pathology Department, Colorado State University , Fort Collins, Colorado 80523, United States.
Dean C CrickChemistry Department, ‡Cell and Molecular Biology Program, and §Microbiology, Immunology, and Pathology Department, Colorado State University , Fort Collins, Colorado 80523, United States.
Debbie C CransChemistry Department, ‡Cell and Molecular Biology Program, and §Microbiology, Immunology, and Pathology Department, Colorado State University , Fort Collins, Colorado 80523, United States.ORCID 0000-0001-7792-3450
Colorado State University · US

Funding

Sterol/Hopanoid Biosynthesis: An Anti-TB Drug TargetR01AI049151 · NIAID · COLORADO STATE UNIVERSITY-FORT COLLINS · PI CRICK, DEAN C · 2001 to 2019
$4.1M
Unraveling the Origin of Pyrazinamide's Synergy with other anti-TB DrugsR21AI119567 · NIAID · COLORADO STATE UNIVERSITY · PI CRICK, DEAN C · 2015 to 2016
$408k
NIAID NIH HHS R01 AI049151NIAID NIH HHS R21 AI119567
6 · The paper itself

Abstract

Menaquinones (naphthoquinones, MK) are isoprenoids that play key roles in the respiratory electron transport system of some prokaryotes by shuttling electrons between membrane-bound protein complexes acting as electron acceptors and donors. Menaquinone-2 (MK-2), a truncated MK, was synthesized, and the studies presented herein characterize the conformational and chemical properties of the hydrophobic MK-2 molecule. Using 2D NMR spectroscopy, we established for the first time that MK-2 has a folded conformation defined by the isoprenyl side-chain folding back over the napthoquinone in a U-shape, which depends on the specific environmental conditions found in different solvents. We used molecular mechanics to illustrate conformations found by the NMR experiments. The measured redox potentials of MK-2 differed in three organic solvents, where MK-2 was most easily reduced in DMSO, which may suggest a combination of solvent effect (presumably in part because of differences in dielectric constants) and/or conformational differences of MK-2 in different organic solvents. Furthermore, MK-2 was found to associate with the interface of model membranes represented by Langmuir phospholipid monolayers and Aerosol-OT (AOT) reverse micelles. MK-2 adopts a slightly different U-shaped conformation within reverse micelles compared to within solution, which is in sharp contrast to the extended conformations illustrated in literature for MKs.

Indexed as

Electrochemical TechniquesMagnetic Resonance SpectroscopyModels, MolecularMolecular ConformationQuinonesSolutionsTerpenesVitamin K 2QuinonesSolutionsTerpenesVitamin K 2

Identifiers

PMID29168636
PMCPMC5759649
OpenAlexW2769113343

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.