Evidence map›Paper›PMID 29168077›Full record

ReviewCell biology and toxicology2018

Progress and challenges of sequencing and analyzing circulating tumor cells.

Zhongyi Zhu, Si Qiu, Kang Shao, Yong Hou

Registry-linked trialAbstract readReview
In one paragraph

Review in Cell biology and toxicology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05242237 (The Prognostic Value of Circulating Tumor Cells Isolated by a Novel Microfluidic Platform in Liver Cancer Patients), which is not on this map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05242237 unknown statusnot on this mapstarted 2021, after this paper: background citation

The Prognostic Value of Circulating Tumor Cells Isolated by a Novel Microfluidic Platform in Liver Cancer Patients

Typeobservational_patient_registrySponsorThe Second Affiliated Hospital of Chongqing Medical UniversityRan2021 to 2024Enrolled300ConditionsHepatocellular Carcinoma, Circulating Tumor Cell, Whole Genome Sequencing
3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

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  15. Branched, dendritic, and hyperbranched polymers in liquid biopsy device design.Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology · 2022
    Review
  16. Article
  17. Circulating tumor cells in colorectal cancer in the era of precision medicine.Journal of molecular medicine (Berlin, Germany) · 2022
    Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Zhongyi ZhuBGI-Shenzhen, Shenzhen, 518083, China.
Si QiuBGI-Shenzhen, Shenzhen, 518083, China.
Kang ShaoBGI-Shenzhen, Shenzhen, 518083, China.
Yong HouBGI-Shenzhen, Shenzhen, 518083, China. houyong@genomics.cn.

Funding

National Natural Science Foundation of China 81672593National Natural Science Foundation of China U1601224Shenzhen Municipal Government of China JSGG20140702161347218
6 · The paper itself

Abstract

Circulating tumor cells (CTCs) slough off primary tumor tissues and are swept away by the circulatory system. These CTCs can remain in circulation or colonize new sites, forming metastatic clones in distant organs. Recently, CTC analyses have been successfully used as effective clinical tools to monitor tumor progression and prognosis. With advances in next-generation sequencing (NGS) and single-cell sequencing (SCS) technologies, scientists can obtain the complete genome of a CTC and compare it with corresponding primary and metastatic tumors. CTC sequencing has been successfully applied to monitor genomic variations in metastatic and recurrent tumors, infer tumor evolution during treatment, and examine gene expression as well as the mechanism of the epithelial-mesenchymal transition. However, compared with cancer biopsy sequencing and circulating tumor DNA sequencing, the sequencing of CTC genomes and transcriptomes is more complex and technically difficult. Challenges include enriching pure tumor cells from a background of white blood cells, isolating and collecting cells without damaging or losing DNA and RNA, obtaining unbiased and even whole-genome and transcriptome amplification material, and accurately analyzing CTC sequencing data. Here, we review and summarize recent studies using NGS on CTCs. We mainly focus on CTC genome and transcriptome sequencing and the biological and potential clinical applications of these methodologies. Finally, we discuss challenges and future perspectives of CTC sequencing.

Indexed as

Biomarkers, TumorComputational BiologyDNAEpithelial-Mesenchymal TransitionGenomeHigh-Throughput Nucleotide SequencingHumansNeoplastic Cells, CirculatingPrognosisSequence Analysis, DNASingle-Cell AnalysisBiomarkers, TumorDNACirculating tumor cellNext-generation sequencingSingle-cell sequencing

Identifiers

PMID29168077
PMCPMC6132989

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.