Evidence map›Paper›PMID 29167704›Full record

ArticleStandards in genomic sciences2017

Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate.

Patrik D'haeseleer, Jackson Z Lee, Leslie Prufert-Bebout, Luke C Burow, Angela M Detweiler, Peter K Weber, Ulas Karaoz, Eoin L Brodie, Tijana Glavina Del Rio, Susannah G Tringe and 2 more

Abstract readCase Reports
In one paragraph

Article in Standards in genomic sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Patrik D'haeseleer *Lawrence Livermore National Laboratory, Livermore, CA USA.
Jackson Z Lee *NASA Ames Research Center, Moffett Field, CA USA.
Leslie Prufert-BeboutNASA Ames Research Center, Moffett Field, CA USA.
Luke C BurowNASA Ames Research Center, Moffett Field, CA USA.
Angela M DetweilerNASA Ames Research Center, Moffett Field, CA USA.
Peter K WeberLawrence Livermore National Laboratory, Livermore, CA USA.
Ulas KaraozLawrence Berkeley National Laboratory, Berkeley, CA USA.
Eoin L BrodieLawrence Berkeley National Laboratory, Berkeley, CA USA.
Tijana Glavina Del RioLawrence Berkeley National Laboratory, Berkeley, CA USA.
Susannah G TringeLawrence Berkeley National Laboratory, Berkeley, CA USA.
Brad M BeboutNASA Ames Research Center, Moffett Field, CA USA.
Jennifer Pett-RidgeLawrence Livermore National Laboratory, Livermore, CA USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyanobacterial mats are laminated microbial ecosystems which occur in highly diverse environments and which may provide a possible model for early life on Earth. Their ability to produce hydrogen also makes them of interest from a biotechnological and bioenergy perspective. Samples of an intertidal microbial mat from the Elkhorn Slough estuary in Monterey Bay, California, were transplanted to a greenhouse at NASA Ames Research Center to study a 24-h diel cycle, in the presence or absence of molybdate (which inhibits biohydrogen consumption by sulfate reducers). Here, we present metagenomic analyses of four samples that will be used as references for future metatranscriptomic analyses of this diel time series.

Indexed as

Elkhorn sloughFermentationHydrogenMetagenomicsMicrobial mats

Identifiers

PMID29167704
PMCPMC5688640

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.