Evidence map›Paper›PMID 29167521›Full record

ArticleScientific reports2017

DNA methylation in silkworm genome may provide insights into epigenetic regulation of response to Bombyx mori cypovirus infection.

Ping Wu, Wencai Jie, Qi Shang, Enoch Annan, Xiaoxu Jiang, Chenxiang Hou, Tao Chen, Xijie Guo

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Ping WuSericultural Research Institute, Jiangsu University of Science and Technology, Zhenjiang, Jiangsu, China.
Wencai JieBeijing Genomics Institute (BGI), Shenzhen, Guangdong, China.
Qi ShangSericultural Research Institute, Jiangsu University of Science and Technology, Zhenjiang, Jiangsu, China.
Enoch AnnanSericultural Research Institute, Jiangsu University of Science and Technology, Zhenjiang, Jiangsu, China.
Xiaoxu JiangSericultural Research Institute, Jiangsu University of Science and Technology, Zhenjiang, Jiangsu, China.
Chenxiang HouSericultural Research Institute, Jiangsu University of Science and Technology, Zhenjiang, Jiangsu, China.
Tao ChenSericultural Research Institute, Jiangsu University of Science and Technology, Zhenjiang, Jiangsu, China.
Xijie GuoSericultural Research Institute, Jiangsu University of Science and Technology, Zhenjiang, Jiangsu, China. guoxijie@126.com.
Jiangsu University of Science and Technology · CNSericultural Research Institute · CNBGI Group (China) · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA methylation is an important epigenetic modification that regulates a wide range of biological processes including immune response. However, information on the epigenetics-mediated immune mechanisms in insects is limited. Therefore, in this study, we examined transcriptomes and DNA methylomes in the fat body and midgut tissues of silkworm, Bombyx mori with or without B. mori cytoplasmic polyhedrosis virus (BmCPV) infection. The transcriptional profile and the genomic DNA methylation patterns in the midgut and fat body were tissue-specific and dynamically altered after BmCPV challenge. KEGG pathway analysis revealed that differentially methylated genes (DMGs) could be involved in pathways of RNA transport, RNA degradation, nucleotide excision repair, DNA replication, etc. 27 genes were shown to have both differential expression and differential methylation in the midgut and fat body of infected larvae, respectively, indicating that the BmCPV infection-induced expression changes of these genes could be mediated by variations in DNA methylation. BS-PCR validated the hypomethylation of G2/M phase-specific E3 ubiquitin-protein ligase-like gene in the BmCPV infected midgut. These results demonstrated that epigenetic regulation may play roles in host-virus interaction in silkworm and would be potential value for further studies on mechanism of BmCPV epithelial-specific infection and epigenetic regulation in the silkworm.

Indexed as

AnimalsBombyxDNA MethylationEpigenesis, GeneticInsect ProteinsMicroRNAsReoviridaeInsect ProteinsMicroRNAs

Identifiers

PMID29167521
PMCPMC5700172
OpenAlexW2768868918

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.