Evidence map›Paper›PMID 29167421›Full record

ArticleNature communications2017

Structural insights into substrate and inhibitor binding sites in human indoleamine 2,3-dioxygenase 1.

Ariel Lewis-Ballester, Khoa N Pham, Dipanwita Batabyal, Shay Karkashon, Jeffrey B Bonanno, Thomas L Poulos, Syun-Ru Yeh

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Monooxygenase Activity of Indoleamine 2,3-Dioxygenase.Journal of the American Chemical Society · 2026
    Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Deciphering Tryptophan Oxygenation: Key Modulators of 2-Oxindole Formation in MarE.Angewandte Chemie (International ed. in English) · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Heme-based dioxygenases: Structure, function and dynamics.Journal of inorganic biochemistry · 2024
    Review

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ariel Lewis-BallesterDepartment of Physiology and Biophysics, Albert Einstein College of Medicine, Bronx, NY, 10461, USA.
Khoa N PhamDepartment of Physiology and Biophysics, Albert Einstein College of Medicine, Bronx, NY, 10461, USA.
Dipanwita BatabyalDepartment of Molecular Biology and Biochemistry, University of California, Irvine, CA, 92697, USA.
Shay KarkashonDepartment of Physiology and Biophysics, Albert Einstein College of Medicine, Bronx, NY, 10461, USA.
Jeffrey B BonannoDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY, 10461, USA.
Thomas L PoulosDepartment of Molecular Biology and Biochemistry, University of California, Irvine, CA, 92697, USA.
Syun-Ru YehDepartment of Physiology and Biophysics, Albert Einstein College of Medicine, Bronx, NY, 10461, USA. syun-ru.yeh@einstein.yu.edu.

Funding

Structure and Function of Heme-based DioxygenasesR01GM115773 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI YEH, SYUN-RU · 2016 to 2023
$3.3M
Structures of time-resolved intermediates in cytochrome c oxidase obtained by serial femtosecond crystallographyR01GM126297 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DENIS L. ROUSSEAU · 2017 to 2026
$3.2M
An integrated X-ray data collection systemS10OD020068 · OD · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI ALMO, STEVEN C. · 2015 to 2015
$600k
NIGMS NIH HHS R01 GM115773NIGMS NIH HHS R01 GM126297NIH HHS S10 OD020068
6 · The paper itself

Abstract

Human indoleamine 2,3-dioxygenase 1 (hIDO1) is an attractive cancer immunotherapeutic target owing to its role in promoting tumoral immune escape. However, drug development has been hindered by limited structural information. Here, we report the crystal structures of hIDO1 in complex with its substrate, Trp, an inhibitor, epacadostat, and/or an effector, indole ethanol (IDE). The data reveal structural features of the active site (Sa) critical for substrate activation; in addition, they disclose a new inhibitor-binding mode and a distinct small molecule binding site (Si). Structure-guided mutation of a critical residue, F270, to glycine perturbs the Si site, allowing structural determination of an inhibitory complex, where both the Sa and Si sites are occupied by Trp. The Si site offers a novel target site for allosteric inhibitors and a molecular explanation for the previously baffling substrate-inhibition behavior of the enzyme. Taken together, the data open exciting new avenues for structure-based drug design.

Indexed as

Allosteric RegulationAllosteric SiteAmino Acid SubstitutionCatalytic DomainCrystallography, X-RayDrug DesignEnzyme InhibitorsHumansIndoleamine-Pyrrole 2,3,-DioxygenaseModels, MolecularMutagenesis, Site-DirectedOximesRecombinant ProteinsSubstrate SpecificitySulfonamidesTryptophanEnzyme InhibitorsepacadostatIDO1 protein, humanIndoleamine-Pyrrole 2,3,-DioxygenaseOximesRecombinant ProteinsSulfonamidesTryptophan

Identifiers

PMID29167421
PMCPMC5700043

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.