Evidence map›Paper›PMID 29167000›Full record

ArticleZhongguo fei ai za zhi = Chinese journal of lung cancer2017

[Study on Genetype in Lung Squamous Carcinoma by High-throughput of 
Transcriptome Sequence].

Ying Xiong, Mingzhen Li, Panpan Zhang, Liyi Zhang, Yue Yang

Open access · greenAbstract read
In one paragraph

Article in Zhongguo fei ai za zhi = Chinese journal of lung cancer, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ying XiongDepartment of Thoracic Surgery II, Beijing Cancer Hospital, Key Laboratory of Carcinogenesis and Translational Research 
(Ministry of Education/Beijing), Peking University Cancer Hospital and Institute, Beijing 100142, China.
Mingzhen LiBeijing Center for Physical and Chemical Analysis, Beijing 100089, China.
Panpan ZhangDepartment of Thoracic Surgery II, Beijing Cancer Hospital, Key Laboratory of Carcinogenesis and Translational Research 
(Ministry of Education/Beijing), Peking University Cancer Hospital and Institute, Beijing 100142, China.
Liyi ZhangDepartment of Thoracic Surgery II, Beijing Cancer Hospital, Key Laboratory of Carcinogenesis and Translational Research 
(Ministry of Education/Beijing), Peking University Cancer Hospital and Institute, Beijing 100142, China.
Yue YangDepartment of Thoracic Surgery II, Beijing Cancer Hospital, Key Laboratory of Carcinogenesis and Translational Research 
(Ministry of Education/Beijing), Peking University Cancer Hospital and Institute, Beijing 100142, China.
Beijing Academy of Science and Technology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRecently, there is no effective targeted drug for to the lung squamous carcinoma, the targeted drug for the adenocarcinoma does not benefit for the patients with squamous lung cancer, and researchers have known less targets for this type of patients. The main study herein is to screen and identify the specific key genes for the lung squamous carcinoma that will provide potential novel targets to describe pathogenesis of lung cancer.

methodsTranscript sequence was used to detect the five pairs lung squamous carcinoma and normal lung tissues and bioinformatics was performed to investigate the differential coding genes between them and quantitative PCR was done to validate the key genes expression in lung cancer cell lines.

resultsThe results of transcriptome sequence showed that 534 genes were up-regulated in the tumor tissues compared with the corresponding normal tissues. The top ten increased genes in the tumors were GAGE12J, SPRR3, PRAME, SPRR1A, SPRR2E, MAGEA3, SPRR1B, IL36G and TMPRSS11D. Next, we identified expression of SPRR family in lung cancer cell lines H520, GLC82, A549, H1299 and PC9. And we found higher expression of SPRR family genes in H1299 cells which metastasized to the lymph node.

conclusionsSPRR family genes are identified to be highly expressed in the lung squamous carcinoma by high throughput transcript sequencing. This SPRR family genes are associated with lymph node metastasis that provide novel idea for lung cancer therapy.
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Indexed as

AdenocarcinomaAgedCarcinoma, Non-Small-Cell LungCarcinoma, Squamous CellCell Line, TumorCornified Envelope Proline-Rich ProteinsFemaleGene Expression Regulation, NeoplasticHumansLung NeoplasmsMaleMiddle AgedPolymerase Chain ReactionRNA, MessengerTranscriptomeCornified Envelope Proline-Rich ProteinsRNA, MessengerSPRR1A protein, humanSPRR1B protein, humanSPRR2D protein, humanSPRR2E protein, humanSPRR3 protein, humanLung neoplasmsSPRR familyTranscriptome sequence

Identifiers

PMID29167000
PMCPMC5973275
OpenAlexW3011760682

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.