Evidence map›Paper›PMID 29165690›Full record

ArticleNucleic acids research2018

The regulatory G4 motif of the Kirsten ras (KRAS) gene is sensitive to guanine oxidation: implications on transcription.

Susanna Cogoi, Annalisa Ferino, Giulia Miglietta, Erik B Pedersen, Luigi E Xodo

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 132 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. 8-Oxoguanine: A Lesion, an Epigenetic Mark, or a Molecular Signal?International journal of molecular sciences · 2025
    Review
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  7. Article
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  17. Article
  18. PromotersRSC chemical biology · 2023
    Article
  19. The Intertwined Role of 8-oxodG and G4 in Transcription Regulation.International journal of molecular sciences · 2023
    Review
  20. Crosstalk between G-quadruplex and ROS.Cell death & disease · 2023
    Review

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Susanna CogoiDepartment of Medicine, University of Udine, 33100 Udine, Italy.
Annalisa FerinoDepartment of Medicine, University of Udine, 33100 Udine, Italy.
Giulia MigliettaDepartment of Medicine, University of Udine, 33100 Udine, Italy.
Erik B PedersenNucleic Acid Center, Institute of Physics and Chemistry, University of Southern Denmark, DK-5230 Odense, Denmark.
Luigi E XodoDepartment of Medicine, University of Udine, 33100 Udine, Italy.
University of Udine · ITUniversity of Southern Denmark · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

KRAS is one of the most mutated genes in human cancer. It is controlled by a G4 motif located upstream of the transcription start site. In this paper, we demonstrate that 8-oxoguanine (8-oxoG), being more abundant in G4 than in non-G4 regions, is a new player in the regulation of this oncogene. We designed oligonucleotides mimicking the KRAS G4-motif and found that 8-oxoG impacts folding and stability of the G-quadruplex. Dimethylsulphate-footprinting showed that the G-run carrying 8-oxoG is excluded from the G-tetrads and replaced by a redundant G-run in the KRAS G4-motif. Chromatin immunoprecipitation revealed that the base-excision repair protein OGG1 is recruited to the KRAS promoter when the level of 8-oxoG in the G4 region is raised by H2O2. Polyacrylamide gel electrophoresis evidenced that OGG1 removes 8-oxoG from the G4-motif in duplex, but when folded it binds to the G-quadruplex in a non-productive way. We also found that 8-oxoG enhances the recruitment to the KRAS promoter of MAZ and hnRNP A1, two nuclear factors essential for transcription. All this suggests that 8-oxoG in the promoter G4 region could have an epigenetic potential for the control of gene expression.

Indexed as

G-QuadruplexesTranscription, GeneticTranscription Initiation SiteCell Line, TumorDNADNA-Binding ProteinsDNA GlycosylasesGuanineHEK293 CellsHeterogeneous Nuclear Ribonucleoprotein A1HumansOxidation-ReductionPromoter Regions, GeneticProtein BindingProto-Oncogene Proteins p21(ras)Transcription Factors8-hydroxyguaninec-MYC-associated zinc finger proteinDNADNA-Binding ProteinsDNA GlycosylasesGuanineHeterogeneous Nuclear Ribonucleoprotein A1KRAS protein, humanoxoguanine glycosylase 1, humanProto-Oncogene Proteins p21(ras)Transcription Factors

Identifiers

PMID29165690
PMCPMC5778462
OpenAlexW2768554905

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.