Evidence map›Paper›PMID 29165633›Full record

ArticleThe Journal of infectious diseases2018

Genetic Variation at IFNL4 Influences Extrahepatic Interferon-Stimulated Gene Expression in Chronic HCV Patients.

Brad R Rosenberg, Catherine A Freije, Naoko Imanaka, Spencer T Chen, Jennifer L Eitson, Rachel Caron, Skyler A Uhl, Marija Zeremski, Andrew Talal, Ira M Jacobson and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Interferon lambda 4 is a gut antimicrobial protein.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Malignancy and viral infections in Sub-Saharan Africa: A review.Frontiers in virology (Lausanne, Switzerland) · 2023
    Article
  7. Distribution ofMicroorganisms · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. TheJournal of virology · 2020
    Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Brad R RosenbergProgram in Immunogenomics, Rockefeller University.
Catherine A FreijeProgram in Immunogenomics, Rockefeller University.
Naoko ImanakaLaboratory of Virology and Infectious Disease, Center for the Study of Hepatitis C, Rockefeller University.
Spencer T ChenProgram in Immunogenomics, Rockefeller University.
Jennifer L EitsonDepartment of Microbiology, Icahn School of Medicine at Mount Sinai.
Rachel CaronProgram in Immunogenomics, Rockefeller University.
Skyler A UhlProgram in Immunogenomics, Rockefeller University.
Marija ZeremskiDivision of Gastroenterology and Hepatology, Weill Cornell Medical College, New York.
Andrew TalalDivision of Gastroenterology and Hepatology, Weill Cornell Medical College, New York.
Ira M JacobsonDivision of Gastroenterology and Hepatology, Weill Cornell Medical College, New York.
Charles M RiceLaboratory of Virology and Infectious Disease, Center for the Study of Hepatitis C, Rockefeller University.
John W SchogginsDepartment of Microbiology, University of Texas Southwestern Medical Center, Dallas.
Rockefeller University · USCornell University · USIcahn School of Medicine at Mount Sinai · USThe University of Texas Southwestern Medical Center · US

Funding

TRANSFORMING TRANSLATIONAL SCIENCE AND EDUCATION TO BENEFIT HUMAN HEALTHUL1RR024143 · NCRR · ROCKEFELLER UNIVERSITY · PI COLLER, BARRY · 2006 to 2011
$49.1M
Understanding B cell memory in response to diverse virus infectionsU19AI111825 · NIAID · ROCKEFELLER UNIVERSITY · PI RAVETCH, JEFFREY VICTOR · 2014 to 2023
$26.0M
Type I interferon-stimulated genes and the antiviral immune responseR01AI091707 · NIAID · ROCKEFELLER UNIVERSITY · PI RICE, CHARLES M · 2011 to 2020
$5.5M
Interactions between type I and III interferon during resolution of HCV infectionK01DK095031 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI SCHOGGINS, JOHN W. · 2012 to 2016
$629k
NCRR NIH HHS UL1 RR024143NIAID NIH HHS R01 AI091707NIAID NIH HHS U19 AI111825NIDDK NIH HHS K01 DK095031
6 · The paper itself

Abstract

Polymorphisms at IFNL4 strongly influence spontaneous resolution and interferon therapeutic response in hepatitis C virus (HCV) infection. In chronic HCV, unfavorable alleles are associated with elevated interferon (IFN)-stimulated gene (ISG) expression in the liver, but extrahepatic effects are less well characterized. We used RNA sequencing (RNA-Seq) to examine whether IFNL4 genetic variation (rs368234815) modulates ISG expression in peripheral blood mononuclear cells (PBMC) during chronic HCV infection. ISG expression was elevated in unstimulated PBMC homozygous for the unfavorable ΔG IFNL4 variant; expression following IFN-α stimulation was comparable across genotypes. These findings suggest that lambda interferons may have broader systemic effects during HCV infection.

Indexed as

Gene Expression RegulationGenetic VariationBlood CellsGene Expression ProfilingHepatitis C, ChronicHumansImmunologic FactorsInterferon-alphaInterferon LambdaInterleukinsLeukocytes, MononuclearSequence Analysis, RNAIFNL4 protein, humanImmunologic FactorsInterferon-alphaInterferon LambdaInterleukinsHepatitis CIFNL4interferoninterferon-stimulated genesperipheral blood mononuclear cells

Identifiers

PMID29165633
PMCPMC5853921
OpenAlexW2769756877

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.