Evidence map›Paper›PMID 29165144›Full record

ArticleEnvironmental health and preventive medicine2017

Isolation and identification of Acanthamoeba strains from soil and tap water in Yanji, China.

Yinghua Xuan, Yanqin Shen, Yuxi Ge, Gen Yan, Shanzi Zheng

Open access · goldAbstract read
In one paragraph

Article in Environmental health and preventive medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 32 citations in OpenAlex.

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  8. Update on Acanthamoeba phylogeny.Parasitology research · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Yinghua XuanDepartment of Basic Medicine, Medical School, Jiangnan University, 1800 Li Hu Road, Wuxi, 214122, Jiangsu, China.
Yanqin ShenDepartment of Basic Medicine, Medical School, Jiangnan University, 1800 Li Hu Road, Wuxi, 214122, Jiangsu, China.
Yuxi GeDepartment of Radiology, Affiliated Hospital of Jiangnan University, No. 200 Huihe Road, Wuxi, 214062, Jiangsu, China.
Gen YanDepartment of Radiology, Affiliated Hospital of Jiangnan University, No. 200 Huihe Road, Wuxi, 214062, Jiangsu, China.
Shanzi ZhengDepartment of Parasitology, College of Medicine, Yanbian University, Yanji, 133000, Jilin, China. szzheng@ybu.edu.cn.
Jiangnan University · CNWuxi Fourth People's Hospital · CNYanbian University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMembers of the genus Acanthamoeba are widely distributed throughout the world, and some of them are considered pathogenic, as they are capable of causing corneal and central nervous system diseases. In this study, we isolated Acanthamoeba strains from soil and tap water in Yanji, China.

methodsWe identified four strains of Acanthamoeba (CJY/S1, CJY/S2, CJY/S3, and CJY/W1) using mitochondrial DNA restriction fragment length polymorphism (mtDNA RFLP) analysis. Nuclear 18S rDNA sequences were used for phylogenetic analysis and species identification.

resultsGenotypic characterization of the isolates showed that they belonged to genotypes T4 (CJY/S1 and CJY/S2), T5 (CJY/S3), and T16 (CJY/W1). Sequence differences between CJY/S1 and Acanthamoeba castellanii Neff, CJY/S2 and Acanthamoeba KA/E7, and CJY/S3 and Acanthamoeba lenticulata 68-2 were 0.31, 0.2, and 0.26%, respectively. 18S ribosomal deoxyribonucleic acid (rDNA) of CJY/W1 had 99% sequence identity to that of Acanthamoeba sp. U/H-C1. Strains CJY/S1 and CJY/S2, isolated from soil, had similar mtDNA RFLP patterns, whereas strain CJY/W1, isolated from tap water, displayed a different pattern.

conclusionsTo the best of our knowledge, this is the first report on the identification of genotypes T4, T5, and T16 from environmental sources in Yanji, China.

Indexed as

Soil MicrobiologyWater MicrobiologyAcanthamoebaChinaDatabases, Nucleic AcidDrinking WaterElectrophoresisGenotypeHumansPhylogenyPolymorphism, Restriction Fragment LengthSequence Analysis, RNADrinking Water18S rDNAAcanthamoebaEnvironmentGenotypeMitochondrial DNA RFLP

Identifiers

PMID29165144
PMCPMC5664816
OpenAlexW2732404304

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.