Evidence map›Paper›PMID 29164995›Full record

ArticleAutophagy2018

Novel polyubiquitin imaging system, PolyUb-FC, reveals that K33-linked polyubiquitin is recruited by SQSTM1/p62.

Yoichi Nibe, Shigeru Oshima, Masanori Kobayashi, Chiaki Maeyashiki, Yu Matsuzawa, Kana Otsubo, Hiroki Matsuda, Emi Aonuma, Yasuhiro Nemoto, Takashi Nagaishi and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Autophagy, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
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  12. Article
  13. Beyond K48 and K63: non-canonical protein ubiquitination.Cellular & molecular biology letters · 2021
    Review
  14. The Role of Deubiquitinating Enzymes in the Various Forms of Autophagy.International journal of molecular sciences · 2020
    Review
  15. Article
  16. Roles of ubiquitin in autophagy and cell death.Seminars in cell & developmental biology · 2019
    Review
  17. Article
  18. Review
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Yoichi Nibea Department of Gastroenterology and Hepatology , Graduate School , Tokyo Medical and Dental University (TMDU) , Tokyo , Japan.
Shigeru Oshimaa Department of Gastroenterology and Hepatology , Graduate School , Tokyo Medical and Dental University (TMDU) , Tokyo , Japan.ORCID 0000-0003-1186-9177
Masanori Kobayashia Department of Gastroenterology and Hepatology , Graduate School , Tokyo Medical and Dental University (TMDU) , Tokyo , Japan.
Chiaki Maeyashikia Department of Gastroenterology and Hepatology , Graduate School , Tokyo Medical and Dental University (TMDU) , Tokyo , Japan.
Yu Matsuzawaa Department of Gastroenterology and Hepatology , Graduate School , Tokyo Medical and Dental University (TMDU) , Tokyo , Japan.
Kana Otsuboa Department of Gastroenterology and Hepatology , Graduate School , Tokyo Medical and Dental University (TMDU) , Tokyo , Japan.
Hiroki Matsudaa Department of Gastroenterology and Hepatology , Graduate School , Tokyo Medical and Dental University (TMDU) , Tokyo , Japan.
Emi Aonumaa Department of Gastroenterology and Hepatology , Graduate School , Tokyo Medical and Dental University (TMDU) , Tokyo , Japan.
Yasuhiro Nemotoa Department of Gastroenterology and Hepatology , Graduate School , Tokyo Medical and Dental University (TMDU) , Tokyo , Japan.
Takashi Nagaishia Department of Gastroenterology and Hepatology , Graduate School , Tokyo Medical and Dental University (TMDU) , Tokyo , Japan.
Ryuichi Okamotoa Department of Gastroenterology and Hepatology , Graduate School , Tokyo Medical and Dental University (TMDU) , Tokyo , Japan.ORCID 0000-0002-7047-571X
Kiichiro Tsuchiyaa Department of Gastroenterology and Hepatology , Graduate School , Tokyo Medical and Dental University (TMDU) , Tokyo , Japan.
Tetsuya Nakamuraa Department of Gastroenterology and Hepatology , Graduate School , Tokyo Medical and Dental University (TMDU) , Tokyo , Japan.
Shinichiro Nakadad Department of Bioregulation and Cellular Response, Graduate School of Medicine , Osaka University , Osaka , Japan.
Mamoru Watanabea Department of Gastroenterology and Hepatology , Graduate School , Tokyo Medical and Dental University (TMDU) , Tokyo , Japan.
Tokyo Medical and Dental University · JPThe University of Osaka · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ubiquitin chains are formed with 8 structurally and functionally distinct polymers. However, the functions of each polyubiquitin remain poorly understood. We developed a polyubiquitin-mediated fluorescence complementation (PolyUb-FC) assay using Kusabira Green (KG) as a split fluorescent protein. The PolyUb-FC assay has the advantage that monoubiquitination is nonfluorescent and chain-specific polyubiquitination can be directly visualized in living cells without using antibodies. We applied the PolyUb-FC assay to examine K33-linked polyubiquitin. We demonstrated that SQSTM1/p62 puncta colocalized with K33-linked polyubiquitin and this interaction was modulated by the ZRANB1/TRABID-K29 and -K33 linkage-specific deubiquitinase (DUB). We further showed that the colocalization of K33-linked polyubiquitin and MAP1LC3/LC3 (microtubule associated protein 1 light chain 3) puncta was impaired by SQSTM1/p62 deficiency. Taken together, these findings provide novel insights into how atypical polyubiquitin is recruited by SQSTM1/p62. Finally, we developed an inducible-PolyUb-FC system for visualizing chain-specific polyubiquitin. The PolyUb-FC will be a useful tool for analyzing the dynamics of atypical polyubiquitin chain generation.

Indexed as

UbiquitinationAnimalsAutophagyCell LineFluorescenceHEK293 CellsHumansMolecular ImagingOptical ImagingPolyubiquitinSequestosome-1 ProteinPolyubiquitinSequestosome-1 ProteinSQSTM1 protein, humanautophagyBiFCK33SQSTM1/p62ubiquitin

Identifiers

PMID29164995
PMCPMC5902196
OpenAlexW2768631827

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.