Evidence map›Paper›PMID 29162933›Full record

ArticleEuropean journal of human genetics : EJHG2018

Deep characterization of a common D4Z4 variant identifies biallelic DUX4 expression as a modifier for disease penetrance in FSHD2.

Richard Jlf Lemmers, Patrick J van der Vliet, Judit Balog, Jelle J Goeman, Wibowo Arindrarto, Yvonne D Krom, Kirsten R Straasheijm, Rashmie D Debipersad, Gizem Özel, Janet Sowden and 7 more

Open access · hybridAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Article
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  4. Polyalanine Expansion in PABPN1 Alters the Structure and Dynamics of Its Nuclear Aggregates in Differentiated Muscle Cells.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
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  6. Review
  7. Article
  8. Article
  9. Article
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  11. Article
  12. Chromosome 10q-linked FSHD identifiesJournal of medical genetics · 2022
    Article
  13. Article
  14. Adenine base editing of theMolecular therapy. Nucleic acids · 2021
    Article
  15. Review
  16. Journal of personalized medicine · 2020
    Review
  17. Review
  18. Article
  19. Observational
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 3 countries.

Richard Jlf LemmersDepartment of Human Genetics, Leiden University Medical Center, Leiden, Netherlands. R.J.L.F.Lemmers@lumc.nl.
Patrick J van der VlietDepartment of Human Genetics, Leiden University Medical Center, Leiden, Netherlands.
Judit BalogDepartment of Human Genetics, Leiden University Medical Center, Leiden, Netherlands.
Jelle J GoemanMedical Statistics and Bioinformatics, Leiden University Medical Center, Leiden, Netherlands.
Wibowo ArindrartoDepartment of Molecular Epidemiology, Leiden University Medical Center, Leiden, Netherlands.
Yvonne D KromDepartment of Neurology, Leiden University Medical Center, Leiden, Netherlands.
Kirsten R StraasheijmDepartment of Human Genetics, Leiden University Medical Center, Leiden, Netherlands.
Rashmie D DebipersadDepartment of Human Genetics, Leiden University Medical Center, Leiden, Netherlands.
Gizem ÖzelDepartment of Human Genetics, Leiden University Medical Center, Leiden, Netherlands.
Janet SowdenNeuromuscular Disease Unit, Department of Neurology, University of Rochester Medical Center, Rochester, NY, USA.
Lauren SniderDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Karlien MulNeuromuscular Centre Nijmegen, Department of Neurology, Radboud University Nijmegen Medical Centre, Nijmegen, Netherlands.
Sabrina SacconiCentre de référence des Maladies neuromusculaires and CNRS UMR6543, Nice University Hospital, Nice, France.
Baziel van EngelenNeuromuscular Centre Nijmegen, Department of Neurology, Radboud University Nijmegen Medical Centre, Nijmegen, Netherlands.
Stephen J TapscottDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Rabi TawilNeuromuscular Disease Unit, Department of Neurology, University of Rochester Medical Center, Rochester, NY, USA.
Silvère M van der MaarelDepartment of Human Genetics, Leiden University Medical Center, Leiden, Netherlands. S.M.van_der_Maarel@lumc.nl.
Leiden University Medical Center · NLFred Hutch Cancer Center · USUniversity of Rochester Medical Center · USCentre Hospitalier Universitaire de Nice · FRRadboud University Medical Center · NLRadboud University Nijmegen · NL

Funding

The Pathogenesis of Facioscapulohumeral Muscular DystrophyP01NS069539 · NINDS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TAPSCOTT, STEPHEN J · 2010 to 2019
$12.3M
NINDS NIH HHS P01 NS069539
6 · The paper itself

Abstract

Facioscapulohumeral muscular dystrophy is caused by incomplete repression of the transcription factor DUX4 in skeletal muscle as a consequence of D4Z4 macrosatellite repeat contraction in chromosome 4q35 (FSHD1) or variants in genes encoding D4Z4 chromatin repressors (FSHD2). A clinical hallmark of FSHD is variability in onset and progression suggesting the presence of disease modifiers. A well-known cis modifier is the polymorphic DUX4 polyadenylation signal (PAS) that defines FSHD permissive alleles: D4Z4 chromatin relaxation on non-permissive alleles which lack the DUX4-PAS cannot cause disease in the absence of stable DUX4 mRNA. We have explored the nature and relevance of a common variant of the major FSHD haplotype 4A161, which is defined by 1.6 kb size difference of the most distal D4Z4 repeat unit. While the short variant (4A161S) has been extensively studied, we demonstrate that the long variant (4A161L) is relatively common in the European population, is capable of expressing DUX4, but that DUX4 mRNA processing differs from 4A161S. While we do not find evidence for a difference in disease severity between FSHD carriers of an 4A161S or 4A161L allele, our study does uncover biallelic DUX4 expression in FSHD2 patients. Compared to control individuals, we observed an increased frequency of FSHD2 patients homozygous for disease permissive alleles, and who are thus capable of biallelic DUX4 expression, while SMCHD1 variant carriers with only one permissive allele were significantly more often asymptomatic. This suggests that biallelic DUX4 expression lowers the threshold for disease presentation and is a modifier for disease severity in FSHD2.

Indexed as

Genes, ModifierPenetranceCells, CulturedFemaleHomeodomain ProteinsHumansMaleMuscle Fibers, SkeletalMuscular Dystrophy, FacioscapulohumeralMutation, MissenseDUX4L1 protein, humanHomeodomain Proteins

Identifiers

PMID29162933
PMCPMC5838976
OpenAlexW2768150453

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.