Evidence map›Paper›PMID 29162929›Full record

ArticleScientific reports2017

Genomic assessment in Lactobacillus plantarum links the butyrogenic pathway with glutamine metabolism.

Cristian Botta, Alberto Acquadro, Anna Greppi, Lorenzo Barchi, Marta Bertolino, Luca Cocolin, Kalliopi Rantsiou

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 44 citations in OpenAlex.

  1. Probiotic properties and functional potential of high-GABABiochemistry and biophysics reports · 2026
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  9. Genomic Assessment of Potential ProbioticTropical life sciences research · 2024
    Article
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  11. Review
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  15. Article
  16. Article
  17. Health-Promoting Nature ofFrontiers in microbiology · 2022
    Article
  18. Article
  19. Impact of Food OriginFrontiers in microbiology · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Cristian BottaDepartment of Forestry, Agriculture and Food Sciences, University of Torino, Turin, Italy.
Alberto AcquadroDepartment of Forestry, Agriculture and Food Sciences, University of Torino, Turin, Italy.
Anna GreppiDepartment of Forestry, Agriculture and Food Sciences, University of Torino, Turin, Italy.
Lorenzo BarchiDepartment of Forestry, Agriculture and Food Sciences, University of Torino, Turin, Italy.ORCID 0000-0001-6414-4239
Marta BertolinoDepartment of Forestry, Agriculture and Food Sciences, University of Torino, Turin, Italy.
Luca CocolinDepartment of Forestry, Agriculture and Food Sciences, University of Torino, Turin, Italy.ORCID 0000-0003-4799-7074
Kalliopi RantsiouDepartment of Forestry, Agriculture and Food Sciences, University of Torino, Turin, Italy. kalliopi.rantsiou@unito.it.
University of Turin · ITETH Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The butyrogenic capability of Lactobacillus (L.) plantarum is highly dependent on the substrate type and so far not assigned to any specific metabolic pathway. Accordingly, we compared three genomes of L. plantarum that showed a strain-specific capability to produce butyric acid in human cells growth media. Based on the genomic analysis, butyric acid production was attributed to the complementary activities of a medium-chain thioesterase and the fatty acid synthase of type two (FASII). However, the genomic islands of discrepancy observed between butyrogenic L. plantarum strains (S2T10D, S11T3E) and the non-butyrogenic strain O2T60C do not encompass genes of FASII, but several cassettes of genes related to sugar metabolism, bacteriocins, prophages and surface proteins. Interestingly, single amino acid substitutions predicted from SNPs analysis have highlighted deleterious mutations in key genes of glutamine metabolism in L. plantarum O2T60C, which corroborated well with the metabolic deficiency suffered by O2T60C in high-glutamine growth media and its consequent incapability to produce butyrate. In parallel, the increase of glutamine content induced the production of butyric acid by L. plantarum S2T10D. The present study reveals a previously undescribed metabolic route for butyric acid production in L. plantarum, and a potential involvement of the glutamine uptake in its regulation.

Indexed as

Genome, BacterialAmino Acid SequenceButyratesButyric AcidFermentationGenes, BacterialGenomic IslandsGenotypeGlucoseGlutamineHydrogen-Ion ConcentrationLactiplantibacillus plantarumPhylogenyPolymorphism, Single NucleotideSequence Analysis, DNAButyratesButyric AcidGlucoseGlutamine

Identifiers

PMID29162929
PMCPMC5698307
OpenAlexW2768628677

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.