Evidence map›Paper›PMID 29162797›Full record

ArticleNature communications2017

3D collagen architecture induces a conserved migratory and transcriptional response linked to vasculogenic mimicry.

D O Velez, B Tsui, T Goshia, C L Chute, A Han, H Carter, S I Fraley

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed, 1 pooled it
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed, 1 synthesis or guideline pooled it, 147 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Imaging Cellular Metabolic Rewiring with SuMMIT-SRS.bioRxiv : the preprint server for biology · 2025
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Monocytes use protrusive forces to generate migration paths in viscoelastic collagen-based extracellular matrices.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Review
  15. Matrix degradation enhances stress relaxation, regulating cell adhesion and spreading.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Article
  17. Review
  18. International journal of molecular sciences · 2024
    Article
  19. Profiling Dynamic Patterns of Single-Cell Motility.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  20. Article

34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

D O VelezDepartment of Bioengineering, University of California, San Diego, La Jolla, CA, 92093, USA.
B TsuiBioinformatics and Systems Biology Program, University of California, San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0001-8017-5895
T GoshiaDepartment of Bioengineering, University of California, San Diego, La Jolla, CA, 92093, USA.
C L ChuteDepartment of Bioengineering, University of California, San Diego, La Jolla, CA, 92093, USA.
A HanDepartment of Bioengineering, University of California, San Diego, La Jolla, CA, 92093, USA.
H CarterDepartment of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0002-1729-2463
S I FraleyDepartment of Bioengineering, University of California, San Diego, La Jolla, CA, 92093, USA. sifraley@ucsd.edu.
University of California San Diego · US

Funding

Network approaches to identify cancer drivers from high-dimensional tumor dataDP5OD017937 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CARTER, HANNAH KATHRYN · 2013 to 2017
$1.9M
NIH HHS DP5 OD017937
6 · The paper itself

Abstract

The topographical organization of collagen within the tumor microenvironment has been implicated in modulating cancer cell migration and independently predicts progression to metastasis. Here, we show that collagen matrices with small pores and short fibers, but not Matrigel, trigger a conserved transcriptional response and subsequent motility switch in cancer cells resulting in the formation of multicellular network structures. The response is not mediated by hypoxia, matrix stiffness, or bulk matrix density, but rather by matrix architecture-induced β1-integrin upregulation. The transcriptional module associated with network formation is enriched for migration and vasculogenesis-associated genes that predict survival in patient data across nine distinct tumor types. Evidence of this gene module at the protein level is found in patient tumor slices displaying a vasculogenic mimicry (VM) phenotype. Our findings link a collagen-induced migration program to VM and suggest that this process may be broadly relevant to metastatic progression in solid human cancers.

Indexed as

Cell MovementCollagenGene Expression Regulation, NeoplasticHumansIntegrin beta1NeoplasmsNeovascularization, PathologicTumor MicroenvironmentCollagenIntegrin beta1

Identifiers

PMID29162797
PMCPMC5698427
OpenAlexW2769533324

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.