Evidence map›Paper›PMID 29162695›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Parallel epigenetic modifications induced by hatchery rearing in a Pacific salmon.

Jérémy Le Luyer, Martin Laporte, Terry D Beacham, Karia H Kaukinen, Ruth E Withler, Jong S Leong, Eric B Rondeau, Ben F Koop, Louis Bernatchez

Abstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed.

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20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jérémy Le LuyerDépartement de Biologie, Institut de Biologie Intégrative et des Systèmes, Université Laval, Québec, QC, Canada G1V OA6; jeremy.le.luyer@ifremer.fr.
Martin LaporteDépartement de Biologie, Institut de Biologie Intégrative et des Systèmes, Université Laval, Québec, QC, Canada G1V OA6.
Terry D BeachamFisheries and Oceans Canada, Pacific Biological Station, Nanaimo, BC, Canada V9R 5K6.
Karia H KaukinenFisheries and Oceans Canada, Pacific Biological Station, Nanaimo, BC, Canada V9R 5K6.
Ruth E WithlerFisheries and Oceans Canada, Pacific Biological Station, Nanaimo, BC, Canada V9R 5K6.
Jong S LeongCentre for Biomedical Research, University of Victoria, Victoria, BC, Canada V8P 5C2.
Eric B RondeauCentre for Biomedical Research, University of Victoria, Victoria, BC, Canada V8P 5C2.
Ben F KoopCentre for Biomedical Research, University of Victoria, Victoria, BC, Canada V8P 5C2.
Louis BernatchezDépartement de Biologie, Institut de Biologie Intégrative et des Systèmes, Université Laval, Québec, QC, Canada G1V OA6.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wild stocks of Pacific salmonids have experienced sharp declines in abundance over the past century. Consequently, billions of fish are released each year for enhancing abundance and sustaining fisheries. However, the beneficial role of this widely used management practice is highly debated since fitness decrease of hatchery-origin fish in the wild has been documented. Artificial selection in hatcheries has often been invoked as the most likely explanation for reduced fitness, and most studies to date have focused on finding signatures of hatchery-induced selection at the DNA level. We tested an alternative hypothesis, that captive rearing induces epigenetic reprogramming, by comparing genome-wide patterns of methylation and variation at the DNA level in hatchery-reared coho salmon (

Indexed as

Epigenesis, GeneticAnimalsDNA MethylationFisheriesFish ProteinsGene OntologyMolecular Sequence AnnotationMuscle, SkeletalOncorhynchusFish Proteinscoho salmonepigeneticshatcherymethylationRAD sequencing

Identifiers

PMID29162695
PMCPMC5724268

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.