Evidence map›Paper›PMID 29161311›Full record

ArticlePloS one2017

Expression and regulation of ATL9, an E3 ubiquitin ligase involved in plant defense.

Fengyan Deng, Tingwei Guo, Mitchell Lefebvre, Steven Scaglione, Christopher J Antico, Tao Jing, Xin Yang, Weixing Shan, Katrina M Ramonell

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Expression of thePlants (Basel, Switzerland) · 2025
    Article
  4. Transcriptome analyses revealPhysiology and molecular biology of plants : an international journal of functional plant biology · 2025
    Article
  5. Deciphering the molecular signatures of tropicalFrontiers in plant science · 2025
    Article
  6. Article
  7. Article
  8. Review
  9. The RING-Type E3 Ubiquitin Ligase GenePlants (Basel, Switzerland) · 2024
    Article
  10. Advanced Genetic Studies on Powdery Mildew Resistance in TGR-1551.International journal of molecular sciences · 2022
    Article
  11. Article
  12. Article
  13. Journal of fungi (Basel, Switzerland) · 2021
    Article
  14. Article
  15. Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Fengyan DengDepartment of Biological Sciences, University of Alabama, Tuscaloosa, AL, United States of America.
Tingwei GuoDepartment of Biological Sciences, University of Alabama, Tuscaloosa, AL, United States of America.
Mitchell LefebvreDepartment of Biological Sciences, University of Alabama, Tuscaloosa, AL, United States of America.
Steven ScaglioneDepartment of Biological Sciences, University of Alabama, Tuscaloosa, AL, United States of America.
Christopher J AnticoDepartment of Biological Sciences, University of Alabama, Tuscaloosa, AL, United States of America.
Tao JingDepartment of Biological Sciences, University of Alabama, Tuscaloosa, AL, United States of America.
Xin YangStatistics Research and Consulting Lab, Culverhouse College of Commerce and Business Administration, University of Alabama, Tuscaloosa, AL, United States of America.
Weixing ShanCollege of Plant Protection, Northwest A&F University, Yangling, Shaanxi, China.
Katrina M RamonellDepartment of Biological Sciences, University of Alabama, Tuscaloosa, AL, United States of America.ORCID http://orcid.org/0000-0002-8044-8694
University of Alabama · USNorthwest A&F University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants are continually exposed to a variety of pathogenic organisms, including bacteria, fungi and viruses. In response to these assaults, plants have developed various defense pathways to protect themselves from pathogen invasion. An understanding of the expression and regulation of genes involved in defense signaling is essential to controlling plant disease. ATL9, an Arabidopsis RING zinc finger protein, is an E3 ubiquitin ligase that is induced by chitin and involved in basal resistance to the biotrophic fungal pathogen, Golovinomyces cichoracearum (G. cichoracearum). To better understand the expression and regulation of ATL9, we studied its expression pattern and the functions of its different protein domains. Using pATL9:GUS transgenic Arabidopsis lines we found that ATL9 is expressed in numerous tissues at various developmental stages and that GUS activity was induced rapidly upon wounding. Using a GFP control protein, we showed that ATL9 is a short-lived protein within plant cells and it is degraded via the ubiquitin-proteasome pathway. ATL9 contains two transmembrane domains (TM), a RING zinc-finger domain, and a PEST domain. Using a series of deletion mutants, we found that the PEST domain and the RING domain have effects on ATL9 degradation. Further infection assays with G. cichoracearum showed that both the RING domain and the TM domains are important for ATL9's resistance phenotype. Interestingly, the PEST domain was also shown to be significant for resistance to fungal pathogens. This study demonstrates that the PEST domain is directly coupled to plant defense regulation and the importance of protein degradation in plant immunity.

Indexed as

ArabidopsisChitinDisease ResistanceFungiGene Expression Regulation, PlantPlant DiseasesPlants, Genetically ModifiedProtein DomainsProteolysisSequence DeletionUbiquitin-Protein LigasesATL9 protein, ArabidopsisChitinUbiquitin-Protein Ligases

Identifiers

PMID29161311
PMCPMC5697834
OpenAlexW2770884438

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.