Evidence map›Paper›PMID 29160132›Full record

ArticleEpigenetics2017

Active H3K27me3 demethylation by KDM6B is required for normal development of bovine preimplantation embryos.

Nhi Chung, Yanina S Bogliotti, Wei Ding, Marcela Vilarino, Kazuki Takahashi, James L Chitwood, Richard M Schultz, Pablo J Ross

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
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  9. Early embryonic lethality of mice lacking POLD2.Molecular reproduction and development · 2023
    Article
  10. Article
  11. Article
  12. Chromatin role in early programming of embryos.Animal frontiers : the review magazine of animal agriculture · 2021
    Article
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  14. Article
  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Nhi Chunga Department of Animal Science , University of California Davis , Davis , CA , USA.
Yanina S Bogliottia Department of Animal Science , University of California Davis , Davis , CA , USA.
Wei Dinga Department of Animal Science , University of California Davis , Davis , CA , USA.
Marcela Vilarinoa Department of Animal Science , University of California Davis , Davis , CA , USA.
Kazuki Takahashia Department of Animal Science , University of California Davis , Davis , CA , USA.
James L Chitwooda Department of Animal Science , University of California Davis , Davis , CA , USA.
Richard M Schultzc Department of Anatomy, Physiology and Cell Biology, School of Veterinary Medicine , University of California Davis , Davis , CA , USA.ORCID 0000-0001-5923-6825
Pablo J Rossa Department of Animal Science , University of California Davis , Davis , CA , USA.ORCID 0000-0002-3972-3754
University of California, Davis · USUniversity of Pennsylvania · US

Funding

Epigenetic control of preimplantation embryo developmentR01HD070044 · NICHD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI ROSS, PABLO JUAN · 2012 to 2016
$676k
NICHD NIH HHS R01 HD070044
6 · The paper itself

Abstract

The substantial epigenetic remodeling that occurs during early stages of mammalian embryonic development likely contributes to reprogramming the parental genomes from a differentiated to a totipotent state and activation of the embryonic genome. Trimethylation of lysine 27 of histone 3 (H3K27me3) is a repressive mark that undergoes global dynamic changes during preimplantation development of several species. To ascertain the role of H3K27me3 in bovine preimplantation development we perturbed the activity of KDM6B, which demethylates H3K27me3. Knockdown of maternal KDM6B mRNA inhibited the reduction in global levels of H3K27me3 from 2-cell to 8-cell embryo stages and compromised development to the blastocyst stage; embryos that developed to the blastocyst stage had fewer inner cell mass (ICM) and trophectoderm (TE) cells. In addition, the transcriptome of KDM6B knockdown embryos was altered at the 8-cell stage and characterized by downregulation of transcripts related to transcriptional regulation, chromatin remodeling, and protein catabolism. Inhibiting the catalytic activity of KDM6B with a specific small molecule inhibitor also prevented the global decrease in H3K27me3 and compromised development to the blastocyst stage. These results indicate that histone demethylation activity, mediated by KDM6B, is required for the global decrease in H3K27me3, correct activation of the embryonic genome, and development to the blastocyst stage in bovine embryos.

Indexed as

Embryonic DevelopmentHistone CodeAnimalsBlastocystCattleCells, CulturedFemaleJumonji Domain-Containing Histone DemethylasesJumonji Domain-Containing Histone DemethylasesCattleembryonic genome activationH3K27me3histone demethylationJMJD3preimplantation developmentreprogrammingtotipotency

Identifiers

PMID29160132
PMCPMC5810760
OpenAlexW2768965686

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.