Evidence map›Paper›PMID 29159997›Full record

ArticleEnvironmental microbiology2018

Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch-degrader Ruminococcus bromii.

Indrani Mukhopadhya, Sarah Moraïs, Jenny Laverde-Gomez, Paul O Sheridan, Alan W Walker, William Kelly, Athol V Klieve, Diane Ouwerkerk, Sylvia H Duncan, Petra Louis and 9 more

Registry-linked trialOpen access · hybridAbstract read
In one paragraph

Article in Environmental microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06292949 (Effect of Resistant Starch on Symptom Improvement and Intestinal Microbiome in Patients With Functional Constipation), which is not on this map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06292949 naunknown statusnot on this mapstarted 2023, after this paper: background citation

Effect of Resistant Starch on Symptom Improvement and Intestinal Microbiome in Patients With Functional Constipation

TypeinterventionalSponsorHuaping XieRan2023 to 2024Enrolled30ConditionsConstipationArmsResistant starch
3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 98 citations in OpenAlex.

  1. Trial
  2. Review
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  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Important roles ofFood science and biotechnology · 2024
    Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. Resistant starch utilization byFood science and biotechnology · 2023
    Review
  17. Article
  18. Article
  19. Tutorial: Microbiome studies in drug metabolism.Clinical and translational science · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 5 countries.

Indrani MukhopadhyaMicrobiology Group, The Rowett Institute, University of Aberdeen, Aberdeen, UK.
Sarah MoraïsDepartment of Biomolecular Sciences, The Weizmann Institute of Science, Rehovot, Israel.
Jenny Laverde-GomezMicrobiology Group, The Rowett Institute, University of Aberdeen, Aberdeen, UK.
Paul O SheridanMicrobiology Group, The Rowett Institute, University of Aberdeen, Aberdeen, UK.
Alan W WalkerMicrobiology Group, The Rowett Institute, University of Aberdeen, Aberdeen, UK.ORCID 0000-0001-5099-8495
William KellyAgResearch Limited, Grasslands Research Centre, Palmerston North 4442, New Zealand.
Athol V KlieveSchool of Agriculture and Food Sciences, The University of Queensland, QLD, St Lucia, Australia.
Diane OuwerkerkQueensland Alliance for Agriculture and Food Innovation, The University of Queensland, QLD, St Lucia, Australia.
Sylvia H DuncanMicrobiology Group, The Rowett Institute, University of Aberdeen, Aberdeen, UK.
Petra LouisMicrobiology Group, The Rowett Institute, University of Aberdeen, Aberdeen, UK.
Nicole KoropatkinDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.
Darrell CockburnDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.
Ryan KiblerDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.
Philip J CooperHospital Cantonal "Padre Alberto Buffoni", Avenida 3 de Julio y Victor Villegas, Quininde, Esmeraldas Province, Ecuador.
Carlos SandovalHospital Cantonal "Padre Alberto Buffoni", Avenida 3 de Julio y Victor Villegas, Quininde, Esmeraldas Province, Ecuador.
Emmanuelle CrostThe Gut Health and Food Safety Institute Strategic Programme, Institute of Food Research, Norwich, UK.
Nathalie JugeThe Gut Health and Food Safety Institute Strategic Programme, Institute of Food Research, Norwich, UK.
Edward A BayerDepartment of Biomolecular Sciences, The Weizmann Institute of Science, Rehovot, Israel.
Harry J FlintMicrobiology Group, The Rowett Institute, University of Aberdeen, Aberdeen, UK.
University of Aberdeen · GBUniversity of Michigan · USQuadram Institute · GBThe University of Queensland · AUWeizmann Institute of Science · ILAgResearch · NZ

Funding

Biotechnology and Biological Sciences Research Council BB/L008602/1Biotechnology and Biological Sciences Research Council BB/L009951/1Wellcome Trust
6 · The paper itself

Abstract

Ruminococcus bromii is a dominant member of the human colonic microbiota that plays a 'keystone' role in degrading dietary resistant starch. Recent evidence from one strain has uncovered a unique cell surface 'amylosome' complex that organizes starch-degrading enzymes. New genome analysis presented here reveals further features of this complex and shows remarkable conservation of amylosome components between human colonic strains from three different continents and a R. bromii strain from the rumen of Australian cattle. These R. bromii strains encode a narrow spectrum of carbohydrate active enzymes (CAZymes) that reflect extreme specialization in starch utilization. Starch hydrolysis products are taken up mainly as oligosaccharides, with only one strain able to grow on glucose. The human strains, but not the rumen strain, also possess transporters that allow growth on galactose and fructose. R. bromii strains possess a full complement of sporulation and spore germination genes and we demonstrate the ability to form spores that survive exposure to air. Spore formation is likely to be a critical factor in the ecology of this nutritionally highly specialized bacterium, which was previously regarded as 'non-sporing', helping to explain its widespread occurrence in the gut microbiota through the ability to transmit between hosts.

Indexed as

Spores, BacterialAnimalsCarbohydrate MetabolismCattleChildColonHumansMaleMicrobiotaMultiprotein ComplexesRumenRuminococcusStarchMultiprotein ComplexesStarch

Identifiers

PMID29159997
PMCPMC5814915
OpenAlexW2770075487

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.