ArticlePeerJ2017
Detection of bacterial contaminants and hybrid sequences in the genome of the kelp
Article in PeerJ, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
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Who cites it
16 citing papers in PubMed, 24 citations in OpenAlex.
- Selecting methods for draft GEM generation in multicellular eukaryotes: a comparative analysis.BMC bioinformatics · 2026Article
- Investigating the relationship between microbial network features of giant kelp "seedbank" cultures and subsequent farm performance.PloS one · 2024Article
- Genomes ofPathogens (Basel, Switzerland) · 2023Article
- A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera).BMC genomics · 2023Article
- GenomeFLTR: filtering reads made easy.Nucleic acids research · 2023Article
- Insights into the potential for mutualistic and harmful host-microbe interactions affecting brown alga freshwater acclimation.Molecular ecology · 2023Article
- Music of metagenomics-a review of its applications, analysis pipeline, and associated tools.Functional & integrative genomics · 2022Review
- CONSULT: accurate contamination removal using locality-sensitive hashing.NAR genomics and bioinformatics · 2021Article
- ZWA: Viral genome assembly and characterization hindrances from virus-host chimeric reads; a refining approach.PLoS computational biology · 2021Article
- Genome Survey Sequencing of In Vivo Mother Plant and In Vitro Plantlets ofPlants (Basel, Switzerland) · 2020Article
- Assessment of databases to determine the validity of β- and γ-carbonic anhydrase sequences from vertebrates.BMC genomics · 2020Article
- Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination.Genome biology · 2019Article
- Genome-Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown AlgaeAntioxidants (Basel, Switzerland) · 2019Article
- Exploring the genome of Arctic Psychrobacter sp. DAB_AL32B and construction of novel Psychrobacter-specific cloning vectors of an increased carrying capacity.Archives of microbiology · 2019Article
- Draft genome sequence of fastidious pathogenFungal biology and biotechnology · 2019Article
- Defending Our Public Biological Databases as a Global Critical Infrastructure.Frontiers in bioengineering and biotechnology · 2019Article
Corrections and comments
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA sequences an important part of analysis pipelines. Here we use Taxoblast, a simple pipeline with a graphical user interface, for the post-assembly detection of contaminating sequences in the published genome of the kelp
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.