Evidence map›Paper›PMID 29158586›Full record

ArticleScientific reports2017

Insights into gene expression profiles induced by Socs3 depletion in keratinocytes.

Archana Bajpai, Takashi Ishii, Kosuke Miyauchi, Vipul Gupta, Yuka Nishio-Masaike, Yuki Shimizu-Yoshida, Masato Kubo, Hiroaki Kitano

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Genetic and genomic insights of the Comcáac people.Journal of community genetics · 2025
    Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Archana BajpaiRIKEN-IMS, Laboratory for Disease Systems Modeling, Yokohama, Japan. archana.bajpai@riken.jp.
Takashi IshiiRIKEN-IMS, Laboratory for Disease Systems Modeling, Yokohama, Japan.
Kosuke MiyauchiRIKEN-IMS, Laboratory for Cytokine Regulation, Yokohama, Japan.
Vipul GuptaRIKEN-IMS, Laboratory for Disease Systems Modeling, Yokohama, Japan.ORCID 0000-0003-3345-7288
Yuka Nishio-MasaikeRIKEN-IMS, Laboratory for Disease Systems Modeling, Yokohama, Japan.
Yuki Shimizu-YoshidaRIKEN-IMS, Laboratory for Disease Systems Modeling, Yokohama, Japan.
Masato KuboRIKEN-IMS, Laboratory for Cytokine Regulation, Yokohama, Japan.
Hiroaki KitanoRIKEN-IMS, Laboratory for Disease Systems Modeling, Yokohama, Japan. hiroaki.kitano@riken.jp.
RIKEN Center for Integrative Medical Sciences · JPOkinawa Institute of Science and Technology Graduate University · JPSony Computer Science Laboratories · JPSystems Biology Institute · JPTokyo University of Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Specific deletion of suppressor of cytokine signaling 3 (Socs3) in keratinocytes can cause severe skin inflammation with infiltration of immune cells. The molecular mechanisms and key regulatory pathways involved in these processes remain elusive. To investigate the role of Socs3 in keratinocytes, we generated and analyzed global RNA-Seq profiles from Socs3 conditional knockout (cKO) mice of two different ages (2 and 10 weeks). Over 400 genes were significantly regulated at both time points. Samples from 2-week-old mice exhibited down-regulation of genes involved in keratin-related functions and up-regulation of genes involved in lipid metabolism. At week 10, multiple chemokine and cytokine genes were up-regulated. Functional annotation revealed that the genes differentially expressed in the 2-week-old mice play roles in keratinization, keratinocyte differentiation, and epidermal cell differentiation. By contrast, differentially expressed genes in the 10-week-old animals are involved in acute immune-related functions. A group of activator protein-1-related genes were highly up-regulated in Socs3 cKO mice of both ages. This observation was validated using qRT-PCR by SOCS3-depleted human keratinocyte-derived HaCaT cells. Our results suggest that, in addition to participating in immune-mediated pathways, SOCS3 also plays important roles in skin barrier homeostasis.

Indexed as

AnimalsGene Expression Regulation, DevelopmentalHumansInflammationKeratinocytesMiceMice, KnockoutSkin DiseasesSuppressor of Cytokine Signaling 3 ProteinSuppressor of Cytokine Signaling 3 Protein

Identifiers

PMID29158586
PMCPMC5696538
OpenAlexW2770208507

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.