Evidence map›Paper›PMID 29158416›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Tracking the genome-wide outcomes of a transposable element burst over decades of amplification.

Lu Lu, Jinfeng Chen, Sofia M C Robb, Yutaka Okumoto, Jason E Stajich, Susan R Wessler

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Review
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  5. Article
  6. Transposable element polymorphisms improve prediction of complex agronomic traits in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
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  7. Article
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  13. Genomic diversity generated by a transposable element burst in a rice recombinant inbred population.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  14. Article
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  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lu LuDepartment of Botany and Plant Sciences, University of California, Riverside CA 92521.
Jinfeng ChenDepartment of Botany and Plant Sciences, University of California, Riverside CA 92521.ORCID 0000-0002-5628-6322
Sofia M C RobbDepartment of Botany and Plant Sciences, University of California, Riverside CA 92521.
Yutaka OkumotoGraduate School of Agriculture, Kyoto University, Kitashirakawa-oiwake Sakyo, Kyoto 606-8502, Japan.
Jason E StajichInstitute for Integrative Genome Biology, University of California, Riverside, CA 92521.ORCID 0000-0002-7591-0020
Susan R WesslerDepartment of Botany and Plant Sciences, University of California, Riverside CA 92521; susan.wessler@ucr.edu.

Funding

Acquisition of a Scalable Storage Cluster for Data Intensive NIH ResearchS10OD016290 · OD · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI GIRKE, THOMAS · 2014 to 2014
$593k
NIH HHS S10 OD016290
6 · The paper itself

Abstract

To understand the success strategies of transposable elements (TEs) that attain high copy numbers, we analyzed two pairs of rice (

Indexed as

DNA Transposable ElementsGene Expression Regulation, PlantGenome, PlantDNA Copy Number VariationsDNA MethylationGenetic LociHigh-Throughput Nucleotide SequencingHistonesMutagenesis, InsertionalOryzaPlant BreedingPolymorphism, Single NucleotideTransposasesDNA Transposable ElementsHistonesTransposasesgenome evolutionMITEmPingricetransposon silencing

Identifiers

PMID29158416
PMCPMC5724284

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.