Evidence map›Paper›PMID 29158402›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Structural insights into enzymatic [4+2]

Dillon P Cogan, Graham A Hudson, Zhengan Zhang, Taras V Pogorelov, Wilfred A van der Donk, Douglas A Mitchell, Satish K Nair

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Unexpected Transformations during Pyrroloiminoquinone Biosynthesis.Journal of the American Chemical Society · 2024
    Article
  5. Article
  6. Unexpected transformations during pyrroloiminoquinone biosynthesis.bioRxiv : the preprint server for biology · 2024
    Article
  7. Review
  8. Article
  9. Enzymatic Pyridine Aromatization during Thiopeptide Biosynthesis.Journal of the American Chemical Society · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Dillon P CoganDepartment of Biochemistry, University of Illinois, Urbana, IL 61801.
Graham A HudsonDepartment of Chemistry, University of Illinois, Urbana, IL 61801.
Zhengan ZhangDepartment of Chemistry, University of Illinois, Urbana, IL 61801.
Taras V PogorelovDepartment of Chemistry, University of Illinois, Urbana, IL 61801.ORCID 0000-0001-5851-7721
Wilfred A van der DonkDepartment of Biochemistry, University of Illinois, Urbana, IL 61801.
Douglas A MitchellDepartment of Chemistry, University of Illinois, Urbana, IL 61801.ORCID 0000-0002-9564-0953
Satish K NairDepartment of Biochemistry, University of Illinois, Urbana, IL 61801; snair@illinois.edu.

Funding

Enzyme Chemistry and Biological Function of RiPP-like Modifications.R01GM097142 · NIGMS · VANDERBILT UNIVERSITY · PI MITCHELL, DOUGLAS ALAN · 2012 to 2024
$4.1M
Structural /Mechanistic Study of Lantibiotic Biosynthetic Enzymes & AutoimmunityR01GM079038 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI NAIR, SATISH K · 2006 to 2023
$3.7M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM079038NIGMS NIH HHS R01 GM097142
6 · The paper itself

Abstract

The [4+2] cycloaddition reaction is an enabling transformation in modern synthetic organic chemistry, but there are only limited examples of dedicated natural enzymes that can catalyze this transformation. Thiopeptides (or more formally thiazolyl peptides) are a class of thiazole-containing, highly modified, macrocyclic secondary metabolites made from ribosomally synthesized precursor peptides. The characteristic feature of these natural products is a six-membered nitrogenous heterocycle that is assembled via a formal [4+2] cycloaddition between two dehydroalanine (Dha) residues. This heteroannulation is entirely contingent on enzyme activity, although the mechanism of the requisite pyridine/dehydropiperidine synthase remains to be elucidated. The unusual

Indexed as

ActinobacteriaAmino Acid SequenceAntibiosisBacterial ProteinsBinding SitesBiocatalysisCatalytic DomainConserved SequenceCrystallography, X-RayCycloaddition ReactionModels, MolecularPeptides, CyclicPeptide SynthasesProtein BindingThiazolesBacterial ProteinsGE 2270 APeptides, CyclicPeptide SynthasesThiazolesthiomuracin A[4+2] cycloadditionantibioticbiosynthesisRiPPthiopeptide

Identifiers

PMID29158402
PMCPMC5724283

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.