Evidence map›Paper›PMID 29158107›Full record

ArticleNeuroscience2018

A Functional Role for the Epigenetic Regulator ING1 in Activity-induced Gene Expression in Primary Cortical Neurons.

Laura J Leighton, Qiongyi Zhao, Xiang Li, Chuanyang Dai, Paul R Marshall, Sha Liu, Yi Wang, Esmi L Zajaczkowski, Nitin Khandelwal, Arvind Kumar and 2 more

Abstract read
In one paragraph

Article in Neuroscience, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. HDAC3-Mediated Repression of theThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2019
    Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 3 countries.

Laura J LeightonCognitive Neuroepigenetics Laboratory, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia.
Qiongyi ZhaoCognitive Neuroepigenetics Laboratory, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia.
Xiang LiCognitive Neuroepigenetics Laboratory, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia.
Chuanyang DaiCognitive Neuroepigenetics Laboratory, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia.
Paul R MarshallCognitive Neuroepigenetics Laboratory, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia.
Sha LiuCognitive Neuroepigenetics Laboratory, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia.
Yi WangCognitive Neuroepigenetics Laboratory, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia.
Esmi L ZajaczkowskiCognitive Neuroepigenetics Laboratory, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia.
Nitin KhandelwalCSIR-Centre for Cellular and Molecular Biology (CCMB), Hyderabad 500007, India.
Arvind KumarCSIR-Centre for Cellular and Molecular Biology (CCMB), Hyderabad 500007, India.
Timothy W BredyCognitive Neuroepigenetics Laboratory, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia; Department of Neurobiology and Behavior, University of California, Irvine 92617, USA. Electronic address: t.bredy@uq.edu.au.
Wei WeiCognitive Neuroepigenetics Laboratory, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia. Electronic address: w.wei@uq.edu.au.
University of Queensland · AUCentre for Cellular and Molecular Biology · IN

Funding

Epitranscriptomic mechanisms of fear-related learning and memoryR01MH109588 · NIMH · UNIVERSITY OF CALIFORNIA-IRVINE · PI SPITALE, ROBERT C · 2016 to 2020
$1.9M
DNA BASE MODIFICATIONS IN NEURAL PLASTICITY AND NEUROPSYCHIATRIC DISORDERSR01MH105398 · NIMH · UNIVERSITY OF CALIFORNIA-IRVINE · PI WOOD, MARCELO ANDRES · 2014 to 2016
$899k
LONG NON-CODING RNAS, LEARNING AND MEMORYR21MH103812 · NIMH · UNIVERSITY OF CALIFORNIA-IRVINE · PI BREDY, TIMOTHY W · 2015 to 2016
$425k
NIMH NIH HHS R01 MH105398NIMH NIH HHS R01 MH109588NIMH NIH HHS R21 MH103812
6 · The paper itself

Abstract

Epigenetic regulation of activity-induced gene expression involves multiple levels of molecular interaction, including histone and DNA modifications, as well as mechanisms of DNA repair. Here we demonstrate that the genome-wide deposition of inhibitor of growth family member 1 (ING1), which is a central epigenetic regulatory protein, is dynamically regulated in response to activity in primary cortical neurons. ING1 knockdown leads to decreased expression of genes related to synaptic plasticity, including the regulatory subunit of calcineurin, Ppp3r1. In addition, ING1 binding at a site upstream of the transcription start site (TSS) of Ppp3r1 depends on yet another group of neuroepigenetic regulatory proteins, the Piwi-like family, which are also involved in DNA repair. These findings provide new insight into a novel mode of activity-induced gene expression, which involves the interaction between different epigenetic regulatory mechanisms traditionally associated with gene repression and DNA repair.

Indexed as

Epigenesis, GeneticAnimalsArgonaute ProteinsCalcium-Binding ProteinsCells, CulturedCerebral CortexFibroblastsGene Expression RegulationGene Knockdown TechniquesHumansInhibitor of Growth Protein 1Intracellular Signaling Peptides and ProteinsMice, Inbred C57BLMuscle ProteinsNeuronsRNA, MessengerArgonaute ProteinsCalcium-Binding ProteinsDSCR1 protein, mouseIng1 protein, mouseInhibitor of Growth Protein 1Intracellular Signaling Peptides and ProteinsMuscle ProteinsPiwil1 protein, mousePiwil2 protein, mouseRNA, MessengerDNA repairepigeneticsgene regulationING1neuronal activationPiwi-like proteins

Identifiers

PMID29158107
PMCPMC5766419
OpenAlexW2952666903

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.