Evidence map›Paper›PMID 29157282›Full record

ArticleParasites & vectors2017

Updated molecular phylogenetic data for Opisthorchis spp. (Trematoda: Opisthorchioidea) from ducks in Vietnam.

Thanh Thi Ha Dao, Thanh Thi Giang Nguyen, Sarah Gabriël, Khanh Linh Bui, Pierre Dorny, Thanh Hoa Le

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 27 citations in OpenAlex.

  1. Parasitic Helminth Infections and Intron Sequence Genotyping ofInternational journal of molecular sciences · 2025
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  3. Hight prevalent ofParasite epidemiology and control · 2024
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  5. Liver Flukes: Clonorchis and Opisthorchis.Advances in experimental medicine and biology · 2024
    Review
  6. Intron Regions as Genetic Markers for Population Genetic Investigations ofAnimals : an open access journal from MDPI · 2023
    Article
  7. Paleobiogeographical origins ofFrontiers in veterinary science · 2022
    Article
  8. Article
  9. Article
  10. Heterophyid trematodes (Digenea) from penguins: A new species ofInternational journal for parasitology. Parasites and wildlife · 2019
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Thanh Thi Ha DaoNational Institute of Veterinary Research, 86. Truong Chinh Street, Dong Da District, Hanoi, Vietnam.
Thanh Thi Giang NguyenNational Institute of Veterinary Research, 86. Truong Chinh Street, Dong Da District, Hanoi, Vietnam.
Sarah GabriëlDepartment of Veterinary Public Health and Food Safety, Faculty of Veterinary Medicine, Ghent University, 133 Salisburylaan, B-9820, Merelbeke, Belgium.
Khanh Linh BuiDepartment of Parasitology, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Trau Quy, Gia Lam, Hanoi, Vietnam.
Pierre DornyDepartment of Biomedical Sciences, Institute of Tropical Medicine, Nationalestraat 155, B2000, Antwerp, Belgium. pdorny@itg.be.ORCID http://orcid.org/0000-0001-5381-7987
Thanh Hoa LeDepartment of Immunology, Institute of Biotechnology and Graduate University of Science and Technology, Vietnam Academy of Science and Technology, 18. Hoang Quoc Viet Rd, Cau Giay, Hanoi, Vietnam.
Ghent University · BENational Institute of Veterinary Research · VNVietnam Academy of Science and Technology · VNVietnam National University of Agriculture · VN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAn opisthorchiid liver fluke was recently reported from ducks (Anas platyrhynchos) in Binh Dinh Province of Central Vietnam, and referred to as "Opisthorchis viverrini-like". This species uses common cyprinoid fishes as second intermediate hosts as does Opisthorchis viverrini, with which it is sympatric in this province. In this study, we refer to the liver fluke from ducks as "Opisthorchis sp. BD2013", and provide new sequence data from the mitochondrial (mt) genome and the nuclear ribosomal transcription unit. A phylogenetic analysis was conducted to clarify the basal taxonomic position of this species from ducks within the genus Opisthorchis (Digenea: Opisthorchiidae).

methodsAdults and eggs of liver flukes were collected from ducks, metacercariae from fishes (Puntius brevis, Rasbora aurotaenia, Esomus metallicus) and cercariae from snails (Bithynia funiculata) in different localities in Binh Dinh Province. From four developmental life stage samples (adults, eggs, metacercariae and cercariae), the complete cytochrome b (cob), nicotinamide dehydrogenase subunit 1 (nad1) and cytochrome c oxidase subunit 1 (cox1) genes, and near-complete 18S and partial 28S ribosomal DNA (rDNA) sequences were obtained by PCR-coupled sequencing. The alignments of nucleotide sequences of concatenated cob + nad1 + cox1, and of concatenated 18S + 28S were separately subjected to phylogenetic analyses. Homologous sequences from other trematode species were included in each alignment.

resultsPhylogenetic trees were inferred from concatenated (cob + nad1 + cox1) nucleotide sequences and combined 18S + 28S nucleotide sequences of five Opisthorchis sp. BD2013 samples and additional reference taxa. Both trees demonstrated the anticipated clustering of taxa within the superfamily Opisthorchioidea, the paraphyly of the genus Opisthorchis and the sister-species relationship of Opisthorchis sp. BD2013 with O. viverrini.

conclusionsWhile it is likely that Opisthorchis sp. BD2013 is distinct from O. viverrini, it is clearly a sister taxon of O. viverrini within the limited number of Opisthorchis species for which appropriate sequence data are available. The new sequences provided here will assist the diagnosis and the taxonomic clarification of the opisthorchiid species.

Indexed as

PhylogenyAnimalsBird DiseasesCercariaCytochromes bDNA, HelminthDNA, RibosomalDucksGenome, MitochondrialMetacercariaeOpisthorchiasisOpisthorchisParasite Egg CountPolymerase Chain ReactionSequence Analysis, DNASnailsCytochromes bDNA, HelminthDNA, Ribosomal18S rDNA28S rDNAMitochondrial geneOpisthorchiidOpisthorchis sp. BD2013Phylogenetic analysisRibosomal transcription unit

Identifiers

PMID29157282
PMCPMC5697094
OpenAlexW2770950035

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.