Evidence map›Paper›PMID 29153505›Full record

ArticleStructure (London, England : 1993)2017

Structural Basis for the Inhibitory Effects of Ubistatins in the Ubiquitin-Proteasome Pathway.

Mark A Nakasone, Timothy A Lewis, Olivier Walker, Anita Thakur, Wissam Mansour, Carlos A Castañeda, Jennifer L Goeckeler-Fried, Frank Parlati, Tsui-Fen Chou, Ortal Hayat and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. The Role of the Ubiquitin System in Eye Diseases.Life (Basel, Switzerland) · 2025
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Small molecules that target the ubiquitin system.Biochemical Society transactions · 2020
    Review
  11. Article
  12. Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 3 countries.

Mark A NakasoneDepartment of Chemistry and Biochemistry, Center for Biomolecular Structure and Organization, University of Maryland, College Park, MD 20742, USA; Faculty of Biology, Technion - Israel Institute of Technology, Haifa, Israel.
Timothy A LewisCenter for the Science of Therapeutics, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Olivier WalkerInstitut des Sciences Analytiques, UMR 5280, CNRS, Université de Lyon, Université Lyon 1, ENS Lyon, 69100 Villeurbanne, France.
Anita ThakurFaculty of Biology, Technion - Israel Institute of Technology, Haifa, Israel.
Wissam MansourFaculty of Biology, Technion - Israel Institute of Technology, Haifa, Israel.
Carlos A CastañedaDepartment of Chemistry and Biochemistry, Center for Biomolecular Structure and Organization, University of Maryland, College Park, MD 20742, USA.
Jennifer L Goeckeler-FriedDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.
Frank ParlatiHoward Hughes Medical Institute, Division of Biology, California Institute of Technology, Pasadena, CA, USA.
Tsui-Fen ChouHoward Hughes Medical Institute, Division of Biology, California Institute of Technology, Pasadena, CA, USA.
Ortal HayatFaculty of Biology, Technion - Israel Institute of Technology, Haifa, Israel.
Daoning ZhangDepartment of Chemistry and Biochemistry, Center for Biomolecular Structure and Organization, University of Maryland, College Park, MD 20742, USA.
Christina M CamaraDepartment of Chemistry and Biochemistry, Center for Biomolecular Structure and Organization, University of Maryland, College Park, MD 20742, USA.
Steven M BonnDepartment of Chemistry and Biochemistry, Center for Biomolecular Structure and Organization, University of Maryland, College Park, MD 20742, USA.
Urszula K NowickaDepartment of Chemistry and Biochemistry, Center for Biomolecular Structure and Organization, University of Maryland, College Park, MD 20742, USA.
Susan KruegerNIST Center for Neutron Research, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA.
Michael H GlickmanFaculty of Biology, Technion - Israel Institute of Technology, Haifa, Israel.
Jeffrey L BrodskyDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.
Raymond J DeshaiesHoward Hughes Medical Institute, Division of Biology, California Institute of Technology, Pasadena, CA, USA.
David FushmanDepartment of Chemistry and Biochemistry, Center for Biomolecular Structure and Organization, University of Maryland, College Park, MD 20742, USA. Electronic address: fushman@umd.edu.
University of Maryland, College Park · USTechnion – Israel Institute of Technology · ILCalifornia Institute of Technology · USUniversity of Pittsburgh · USBroad Institute · USNIST Center for Neutron Research · USUniversité Claude Bernard Lyon 1 · FR

Funding

Single Nephron and MetabolomicsP30DK079307 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KLEYMAN, THOMAS R · 2008 to 2022
$13.4M
Solution structure and dynamics of polyubiquitin chainsR01GM065334 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI DAVID FUSHMAN · 2002 to 2026
$6.2M
ER Associated Degradation of Membrane Proteins in YeastR01GM075061 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BRODSKY, JEFFREY L. · 2006 to 2019
$3.2M
Recognition of non-ubiquitin signals at the proteasomeR01GM095755 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI FUSHMAN, DAVID · 2011 to 2014
$1.4M
NCI NIH HHS N01 CO012400NIDDK NIH HHS P30 DK079307NIGMS NIH HHS R01 GM065334NIGMS NIH HHS R01 GM075061NIGMS NIH HHS R01 GM095755
6 · The paper itself

Abstract

The discovery of ubistatins, small molecules that impair proteasomal degradation of proteins by directly binding to polyubiquitin, makes ubiquitin itself a potential therapeutic target. Although ubistatins have the potential for drug development and clinical applications, the lack of structural details of ubiquitin-ubistatin interactions has impeded their development. Here, we characterized a panel of new ubistatin derivatives using functional and binding assays. The structures of ubiquitin complexes with ubistatin B and hemi-ubistatin revealed direct interactions with ubiquitin's hydrophobic surface patch and the basic/polar residues surrounding it. Ubistatin B binds ubiquitin and diubiquitin tighter than a high-affinity ubiquitin receptor and shows strong preference for K48 linkages over K11 and K63. Furthermore, ubistatin B shields ubiquitin conjugates from disassembly by a range of deubiquitinases and by the 26S proteasome. Finally, ubistatin B penetrates cancer cells and alters the cellular ubiquitin landscape. These findings highlight versatile properties of ubistatins and have implications for their future development and use in targeting ubiquitin-signaling pathways.

Indexed as

Binding SitesCell LineHeLa CellsHumansMolecular Docking SimulationProteasome Endopeptidase ComplexProtein BindingQuinolinesSaccharomyces cerevisiaeSulfanilic AcidsUbiquitinsProteasome Endopeptidase ComplexQuinolinesSulfanilic AcidsUbiquitinsubistatin BdeubiquitinationNMRpolyubiquitinSANSubiquitinationubiquitin-proteasome systemubistatin

Identifiers

PMID29153505
PMCPMC5731780
OpenAlexW2768649890

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.