Evidence map›Paper›PMID 29150609›Full record

ArticleNature communications2017

Atomic resolution snapshot of Leishmania ribosome inhibition by the aminoglycoside paromomycin.

Moran Shalev-Benami, Yan Zhang, Haim Rozenberg, Yuko Nobe, Masato Taoka, Donna Matzov, Ella Zimmerman, Anat Bashan, Toshiaki Isobe, Charles L Jaffe and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 95 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Mechanism of read-through enhancement by aminoglycosides and mefloquine.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. Review
  9. Review
  10. R2DT: A COMPREHENSIVE PLATFORM FOR VISUALISING RNA SECONDARY STRUCTURE.bioRxiv : the preprint server for biology · 2024
    Article
  11. Molecular Mechanisms of Drug Resistance inPathogens (Basel, Switzerland) · 2024
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Moran Shalev-BenamiFaculty of Chemistry, Department of Structural Biology, Weizmann Institute of Science, Rehovot, 761001, Israel. moransb@stanford.edu.
Yan ZhangDepartments of Molecular and Cellular Physiology, and Structural Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Haim RozenbergFaculty of Chemistry, Department of Structural Biology, Weizmann Institute of Science, Rehovot, 761001, Israel.
Yuko NobeGraduate School of Science and Engineering, Tokyo Metropolitan University, Hachioji-shi, Tokyo, 192-0397, Japan.
Masato TaokaGraduate School of Science and Engineering, Tokyo Metropolitan University, Hachioji-shi, Tokyo, 192-0397, Japan.
Donna MatzovFaculty of Chemistry, Department of Structural Biology, Weizmann Institute of Science, Rehovot, 761001, Israel.
Ella ZimmermanFaculty of Chemistry, Department of Structural Biology, Weizmann Institute of Science, Rehovot, 761001, Israel.
Anat BashanFaculty of Chemistry, Department of Structural Biology, Weizmann Institute of Science, Rehovot, 761001, Israel.
Toshiaki IsobeGraduate School of Science and Engineering, Tokyo Metropolitan University, Hachioji-shi, Tokyo, 192-0397, Japan.
Charles L JaffeDepartment of Microbiology and Molecular Genetics, IMRIC, Hebrew University-Hadassah Medical School, Jerusalem, 91120, Israel.
Ada YonathFaculty of Chemistry, Department of Structural Biology, Weizmann Institute of Science, Rehovot, 761001, Israel. ada.yonath@weizmann.ac.il.
Georgios SkiniotisDepartments of Molecular and Cellular Physiology, and Structural Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA. yiorgo@stanford.edu.ORCID http://orcid.org/0000-0003-0238-7846
Weizmann Institute of Science · ILTokyo Metropolitan University · JPHebrew University of Jerusalem · ILStanford Medicine · USStanford University · US

Funding

Architectural Basis of Leptin Transmembrane SignalingR01DK090165 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SKINIOTIS, GEORGIOS · 2011 to 2017
$2.3M
Silicon Mechanics Compute ClusterS10OD020011 · OD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SKINIOTIS, GEORGIOS · 2015 to 2015
$490k
NIDDK NIH HHS R01 DK090165NIH HHS S10 OD020011
6 · The paper itself

Abstract

Leishmania is a single-celled eukaryotic parasite afflicting millions of humans worldwide, with current therapies limited to a poor selection of drugs that mostly target elements in the parasite's cell envelope. Here we determined the atomic resolution electron cryo-microscopy (cryo-EM) structure of the Leishmania ribosome in complex with paromomycin (PAR), a highly potent compound recently approved for treatment of the fatal visceral leishmaniasis (VL). The structure reveals the mechanism by which the drug induces its deleterious effects on the parasite. We further show that PAR interferes with several aspects of cytosolic translation, thus highlighting the cytosolic rather than the mitochondrial ribosome as the primary drug target. The results also highlight unique as well as conserved elements in the PAR-binding pocket that can serve as hotspots for the development of novel therapeutics.

Indexed as

Amino Acid SequenceBase SequenceBinding SitesCryoelectron MicroscopyCytosolHumansLeishmaniaModels, MolecularParomomycinProtein BiosynthesisRibosomal ProteinsRibosomesRNA, RibosomalSequence Homology, Amino AcidParomomycinRibosomal ProteinsRNA, Ribosomal

Identifiers

PMID29150609
PMCPMC5693986
OpenAlexW2769523708

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.