Evidence map›Paper›PMID 29149916›Full record

ArticleGenome medicine2017

Whole-exome sequencing in amyotrophic lateral sclerosis suggests NEK1 is a risk gene in Chinese.

Jacob Gratten, Qiongyi Zhao, Beben Benyamin, Fleur Garton, Ji He, Paul J Leo, Marie Mangelsdorf, Lisa Anderson, Zong-Hong Zhang, Lu Chen and 28 more

Open access · goldAbstract read
In one paragraph

Article in Genome medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. NEK1 mutations and the risk of amyotrophic lateral sclerosis (ALS): a meta-analysis.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2021
    Pooled it
  2. Article
  3. Frontiers in aging neuroscience · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Frontiers in neuroscience · 2022
    Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Review
  18. Checking NEKs: Overcoming a Bottleneck in Human Diseases.Molecules (Basel, Switzerland) · 2020
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors at 11 institutions in 3 countries.

Jacob GrattenQueensland Brain Institute, The University of Queensland, Brisbane, QLD, 4072, Australia.
Qiongyi ZhaoQueensland Brain Institute, The University of Queensland, Brisbane, QLD, 4072, Australia.
Beben BenyaminQueensland Brain Institute, The University of Queensland, Brisbane, QLD, 4072, Australia.
Fleur GartonQueensland Brain Institute, The University of Queensland, Brisbane, QLD, 4072, Australia.
Ji HeDepartment of Neurology, Peking University Third Hospital, No 49, North Garden Road, Haidian District, Beijing, 100191, China.
Paul J LeoUniversity of Queensland Diamantina Institute, The University of Queensland, Translational Research Institute, Brisbane, QLD, 4102, Australia.
Marie MangelsdorfQueensland Brain Institute, The University of Queensland, Brisbane, QLD, 4072, Australia.
Lisa AndersonUniversity of Queensland Diamantina Institute, The University of Queensland, Translational Research Institute, Brisbane, QLD, 4102, Australia.
Zong-Hong ZhangQueensland Brain Institute, The University of Queensland, Brisbane, QLD, 4072, Australia.
Lu ChenDepartment of Neurology, Peking University Third Hospital, No 49, North Garden Road, Haidian District, Beijing, 100191, China.
Xiang-Ding ChenLaboratory of Molecular and Statistical Genetics and the Key Laboratory of Protein Chemistry and Developmental Biology of the Ministry of Education, College of Life Sciences, Hunan Normal University, Changsha, Hunan, China.
Katie CreminUniversity of Queensland Diamantina Institute, The University of Queensland, Translational Research Institute, Brisbane, QLD, 4102, Australia.
Hong-Weng DengCenter for Bioinformatics and Genomics, Department of Global Biostatistics and Data Science, School of Public Health and Tropical Medicine, Tulane University, 1440 Canal St, Suite 2001, New Orleans, LA, 70112, USA.
Janette EdsonQueensland Brain Institute, The University of Queensland, Brisbane, QLD, 4072, Australia.
Ying-Ying HanCenter of System Biomedical Sciences, University of Shanghai for Science and Technology, 334, Jungong Road, Yangpu District, Shanghai, 200093, China.
Jessica HarrisUniversity of Queensland Diamantina Institute, The University of Queensland, Translational Research Institute, Brisbane, QLD, 4102, Australia.
Anjali K HendersQueensland Brain Institute, The University of Queensland, Brisbane, QLD, 4072, Australia.
Zi-Bing JinDivision of Ophthalmic Genetics, Laboratory for Stem Cell and Retinal Regeneration, The Eye Hospital of Wenzhou Medical University, Wenzhou, 325027, China.
Zhongshan LiInstitute of Genomic Medicine, Wenzhou Medical University, Wenzhou, 325027, China.
Yong LinCenter of System Biomedical Sciences, University of Shanghai for Science and Technology, 334, Jungong Road, Yangpu District, Shanghai, 200093, China.
Xiaolu LiuDepartment of Neurology, Peking University Third Hospital, No 49, North Garden Road, Haidian District, Beijing, 100191, China.
Mhairi MarshallUniversity of Queensland Diamantina Institute, The University of Queensland, Translational Research Institute, Brisbane, QLD, 4102, Australia.
Bryan J MowryQueensland Brain Institute, The University of Queensland, Brisbane, QLD, 4072, Australia.
Shu RanCenter of System Biomedical Sciences, University of Shanghai for Science and Technology, 334, Jungong Road, Yangpu District, Shanghai, 200093, China.
David C ReutensThe Centre for Advanced Imaging, The University of Queensland, Brisbane, QLD, 4072, Australia.
Sharon SongUniversity of Queensland Diamantina Institute, The University of Queensland, Translational Research Institute, Brisbane, QLD, 4102, Australia.
Li-Jun TanLaboratory of Molecular and Statistical Genetics and the Key Laboratory of Protein Chemistry and Developmental Biology of the Ministry of Education, College of Life Sciences, Hunan Normal University, Changsha, Hunan, China.
Lu TangDepartment of Neurology, Peking University Third Hospital, No 49, North Garden Road, Haidian District, Beijing, 100191, China.
Robyn H WallaceQueensland Brain Institute, The University of Queensland, Brisbane, QLD, 4072, Australia.
Lawrie WheelerUniversity of Queensland Diamantina Institute, The University of Queensland, Translational Research Institute, Brisbane, QLD, 4102, Australia.
Jinyu WuInstitute of Genomic Medicine, Wenzhou Medical University, Wenzhou, 325027, China.
Jian YangQueensland Brain Institute, The University of Queensland, Brisbane, QLD, 4072, Australia.
Huji XuDepartment of Rheumatology and Immunology, Shanghai Changzheng Hospital, The Second Military Medical University, Shanghai, 200003, China.
Peter M VisscherQueensland Brain Institute, The University of Queensland, Brisbane, QLD, 4072, Australia.
Perry F BartlettQueensland Brain Institute, The University of Queensland, Brisbane, QLD, 4072, Australia.
Matthew A BrownUniversity of Queensland Diamantina Institute, The University of Queensland, Translational Research Institute, Brisbane, QLD, 4102, Australia.
Naomi R WrayQueensland Brain Institute, The University of Queensland, Brisbane, QLD, 4072, Australia. naomi.wray@uq.edu.au.
Dongsheng FanDepartment of Neurology, Peking University Third Hospital, No 49, North Garden Road, Haidian District, Beijing, 100191, China.
University of Queensland · AUQueensland University of Technology · AUTranslational Research Institute · AUPeking University · CNUniversity of Shanghai for Science and Technology · CNWenzhou Medical University · CNHunan Normal University · CNPeking University Third Hospital · CNPark Centre for Mental Health · AUShanghai Changzheng Hospital · CNTulane University · US

Funding

Trans-omics Integration of Multi-omics Studies for OsteoporosisU19AG055373 · NIA · TULANE UNIVERSITY OF LOUISIANA · PI HUI SHEN · 2017 to 2026
$24.3M
Decoding Methylation Mediated Epigenomic Contributions to Male OsteoporosisR01AR069055 · NIAMS · TULANE UNIVERSITY OF LOUISIANA · PI DENG, HONG-WEN · 2017 to 2021
$2.9M
Australian Research Council Linkage GrantMotor Neurone Disease Research Institute of Australia Ross Maclean Senior Research FellowshipMotor Neurone Disease Research Institute of Australia Ross Maclean Senior Research FellowshipsNational Health and Medical Research Council 1103418National Health and Medical Research Council 1127440National Natural Science Foundation of China 81522014National Natural Science Foundation of China 81601105NIAMS NIH HHS R01 AR069055NIA NIH HHS U19 AG055373
6 · The paper itself

Abstract

backgroundAmyotrophic lateral sclerosis (ALS) is a progressive neurological disease characterised by the degeneration of motor neurons, which are responsible for voluntary movement. There remains limited understanding of disease aetiology, with median survival of ALS of three years and no effective treatment. Identifying genes that contribute to ALS susceptibility is an important step towards understanding aetiology. The vast majority of published human genetic studies, including for ALS, have used samples of European ancestry. The importance of trans-ethnic studies in human genetic studies is widely recognised, yet a dearth of studies of non-European ancestries remains. Here, we report analyses of novel whole-exome sequencing (WES) data from Chinese ALS and control individuals.

methodsWES data were generated for 610 ALS cases and 460 controls drawn from Chinese populations. We assessed evidence for an excess of rare damaging mutations at the gene level and the gene set level, considering only singleton variants filtered to have allele frequency less than 5 × 10

resultsNo gene passed the genome-wide significance threshold with ALS in Chinese samples alone. Combining rare variant counts in Chinese with those from the largest WES study of European ancestry resulted in three genes surpassing genome-wide significance: TBK1 (p = 8.3 × 10

conclusionsWhile SOD1 is already recognised as an ALS-associated gene in Chinese, we provide novel evidence for association of NEK1 with ALS in Chinese, reporting variants in these genes not previously found in Europeans.

Indexed as

Amyotrophic Lateral SclerosisAsian PeopleExome SequencingGenetic Predisposition to DiseaseHumansNIMA-Related Kinase 1RiskNEK1 protein, humanNIMA-Related Kinase 1

Identifiers

PMID29149916
PMCPMC5693798
OpenAlexW2768314665

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.