ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2018
Draft genome analysis provides insights into the fiber yield, crude protein biosynthesis, and vegetative growth of domesticated ramie (Boehmeria nivea L. Gaud).
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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17 citing papers in PubMed, 36 citations in OpenAlex.
- The telomere-to-telomere genome and comparative analysis from algae to higher plants reveal origin and evolution of biosynthesis of chlorogenic acid pathway and production in ramie (Horticulture research · 2026Article
- Improving Ramie Fiber: Current Progress and Future Directions in Molecular Breeding.Plants (Basel, Switzerland) · 2026Review
- Identifying Candidate Genes for Grape (Journal of agricultural and food chemistry · 2025Article
- Integrated microRNA and whole-transcriptome sequencing reveals the involvement of small and long non-coding RNAs in the fiber growth of ramie plant.BMC genomics · 2023Article
- Joint QTL Mapping and Transcriptome Sequencing Analysis Reveal Candidate Seed-Shattering-Related Genes in Common Buckwheat.International journal of molecular sciences · 2023Article
- Genome-wide analysis of R2R3-MYB transcription factors inFrontiers in genetics · 2023Article
- Article
- Genetic insights into the crude protein and fiber content of ramie leaves.Frontiers in plant science · 2022Article
- Improving Drought Stress Tolerance in Ramie (Frontiers in plant science · 2022Review
- Identification of proteins associated with bast fiber growth of ramie by differential proteomic analysis.BMC genomics · 2021Article
- The genome of Medicago polymorpha provides insights into its edibility and nutritional value as a vegetable and forage legume.Horticulture research · 2021Article
- Editorial: Applied Genetics of Natural Fiber Plants.Frontiers in genetics · 2021Article
- Comparative transcriptomics of stem bark reveals genes associated with bast fiber development in Boehmeria nivea L. gaud (ramie).BMC genomics · 2020Article
- PromoterFrontiers in genetics · 2020Article
- Selection of Reference Genes for qPCR Analyses of Gene Expression in Ramie Leaves and Roots across Eleven Abiotic/Biotic Treatments.Scientific reports · 2019Article
- A genomic resource derived from the integration of genome sequences, expressed transcripts and genetic markers in ramie.BMC genomics · 2019Article
- Comparative transcriptomics reveals the selection patterns of domesticated ramie.Ecology and evolution · 2019Article
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Authors and funding
12 authors at 5 institutions in 1 country.
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No grant is acknowledged in the PubMed record.
Abstract
Plentiful bast fiber, a high crude protein content, and vigorous vegetative growth make ramie a popular fiber and forage crop. Here, we report the draft genome of ramie, along with a genomic comparison and evolutionary analysis. The draft genome contained a sequence of approximately 335.6 Mb with 42,463 predicted genes. A high-density genetic map with 4,338 single nucleotide polymorphisms (SNPs) was developed and used to anchor the genome sequence, thus, creating an integrated genetic and physical map containing a 58.2-Mb genome sequence and 4,304 molecular markers. A genomic comparison identified 1,075 unique gene families in ramie, containing 4,082 genes. Among these unique genes, five were cellulose synthase genes that were specifically expressed in stem bark, and 3 encoded a WAT1-related protein, suggesting that they are probably related to high bast fiber yield. An evolutionary analysis detected 106 positively selected genes, 22 of which were related to nitrogen metabolism, indicating that they are probably responsible for the crude protein content and vegetative growth of domesticated varieties. This study is the first to characterize the genome and develop a high-density genetic map of ramie and provides a basis for the genetic and molecular study of this crop.
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