Evidence map›Paper›PMID 29147935›Full record

ArticleTropical animal health and production2018

Nucleotide and octapeptide-repeat variations of the prion protein coding gene (PRNP) in Anatolian, Murrah, and crossbred water buffaloes.

Yalçın Yaman, Cemal Ün

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In one paragraph

Article in Tropical animal health and production, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. PrPInternational journal of biological sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Yalçın YamanDepartment of Biometry and Genetics, Sheep Research Institute, Çanakkale road, 7.km, 10220, Bandirma, Balikesir, Turkey. yalcinyaman@gmail.com.ORCID http://orcid.org/0000-0003-2705-2831
Cemal ÜnFaculty of Science, Department of Biology, Ege University, 35040, İzmir, Turkey.
Bandırma Onyedi Eylül University · TREge University · TR

Funding

General Directorate of Agricultural Research and Policies (TAGEM) of Republic of Turkey Ministry of Food, Agriculture and Livestock TAGEM/12/02/01/05
6 · The paper itself

Abstract

Resistance to bovine spongiform encephalopathy (BSE) that is significantly associated with insertion/deletion (indel) polymorphisms at two loci (putative promoter and intron 1) on the prion protein gene (PRNP) in cattle has been well documented. Studies suggest that the insertion alleles are related to BSE resistance. Until recently, BSE has never been reported in water buffaloes (unlike cattle). Previous studies have demonstrated that the PRNP gene in water buffalo consists mostly of insertion alleles at both loci; nevertheless, whether or not water buffaloes are genetically resistant to BSE and the role of indel polymorphisms in their resistance status is not clear. We examined the coding region of PRNP to determine the nucleotide and octapeptide-repeat (octarepeats) variations of Anatolian, Murrah and Murrah × Anatolian (M × A) water buffaloes. Three synonymous single nucleotide polymorphisms (SNP) at positions 126, 234, and 285, and a non-synonymous SNP at position 322 (G108S) were detected. Triplet G/A/T base substitutions were observed at position 126 and two additional genotypes, T/A and T/G, at this position were determined. We also found six octarepeats that indicated the presence of the wild-type PRNP6 allele in the coding region. To the best of our knowledge, this is the first report of the T/A and T/G genotypes in water buffaloes.

Indexed as

BreedingCrosses, GeneticPolymorphism, Single NucleotideAllelesAnimalsBuffaloesCattleEncephalopathy, Bovine SpongiformExonsGenotypeINDEL MutationIntronsNucleotidesOpen Reading FramesPolymorphism, GeneticPrion ProteinsNucleotidesPrion ProteinsPrionsCoding regionNucleotide polymorphismsOctarepeatsPRNP geneWater buffalo

Identifiers

PMID29147935
OpenAlexW2768961225

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.