Evidence map›Paper›PMID 29147851›Full record

ArticleTheory in biosciences = Theorie in den Biowissenschaften2018

Bijective codon transformations show genetic code symmetries centered on cytosine's coding properties.

Hervé Seligmann

Abstract read
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In one paragraph

Article in Theory in biosciences = Theorie in den Biowissenschaften, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Chimeric Translation for Mitochondrial Peptides: Regular and Expanded Codons.Computational and structural biotechnology journal · 2019
    Article
  5. Protein Sequences Recapitulate Genetic Code Evolution.Computational and structural biotechnology journal · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Hervé SeligmannUnité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes, Faculté de Médecine, URMITE CNRS-IRD 198, UMR 6236, Université de la Méditerranée, Marseille, France. varanuseremius@gmail.com.

Funding

A*MIDEX ANR-11-IDEX-0001-02Fondation Méditerranée Infection ANR-10-IAHU-03
6 · The paper itself

Abstract

Homology of some RNAs with template DNA requires systematic exchanges between nucleotides. Such exchanges produce 'swinger' RNA along 23 bijective transformations (nine symmetric, X ↔ Y; and 14 asymmetric, X → Y → Z → X, for example A ↔ C and A → C → G → A, respectively). Here, analyses compare amino acids coded by swinger-transformed codons to those coded by untransformed codons, defining coding invariance after transformations. Swinger transformations cluster according to coding invariance in four groups characterized by transformations into cytosine (C = C, T → C, A → C, and G → C). C's central mutational coding role shows that swinger transformations constrained genetic code genesis. Coding invariance post-transformations correlate positively/negatively with mitochondrial swinger transcription/lepidosaurian body temperature. Presumably, low/high temperatures stabilize/revert rare swinger polymerization modes, producing long swinger sequences/point mutations, respectively. Coding invariance after swinger transformations might compensate effects of swinger polymerizations in species with low body temperatures. Hypothetically, swinger transcription increased coding potential of RNA self-replicating protolife systems under heating/cooling cycles.

Indexed as

CodonMutationAnimalsBody TemperatureCluster AnalysisCytosineDNA ReplicationGenetic CodeHumansHydrothermal VentsModels, GeneticNucleotidesPhylogenyPoint MutationRNATranscription, GeneticCodonCytosineNucleotidesRNAAbyssal hydrothermal ventCircular codesRumer’s transformation

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.