ArticleScientific reports2017
Gpufit: An open-source toolkit for GPU-accelerated curve fitting.
Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
What it found
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Who cites it
23 citing papers in PubMed.
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- Molecular-scale isotropic 3D super-resolution microscopy via interference localization.Nature methods · 2026Article
- Single-molecule tracking of RNA-DNA hybrid removal enzymes important for lagging-strand replication.bioRxiv : the preprint server for biology · 2025Article
- Open-source 3D active sample stabilization for fluorescence microscopy.Biophysical reports · 2025Article
- Time-Resolved Diamond Magnetic Microscopy of Superparamagnetic Iron-Oxide Nanoparticles.ACS nano · 2025Article
- Bessel beam optical coherence microscopy enables multiscale assessment of cerebrovascular network morphology and function.Light, science & applications · 2024Article
- Edge-illumination spectral phase-contrast tomography.Physics in medicine and biology · 2024Article
- scNodes: a correlation and processing toolkit for super-resolution fluorescence and electron microscopy.Nature methods · 2023Article
- High-resolution line-scan Brillouin microscopy for live imaging of mechanical properties during embryo development.Nature methods · 2023Article
- PEPI Lab: a flexible compact multi-modal setup for X-ray phase-contrast and spectral imaging.Scientific reports · 2023Article
- An open-source microscopy framework for simultaneous control of image acquisition, reconstruction, and analysis.HardwareX · 2023Article
- Deep learning-assisted co-registration of full-spectral autofluorescence lifetime microscopic images with H&E-stained histology images.Communications biology · 2022Article
- Optimal precision and accuracy in 4Pi-STORM using dynamic spline PSF models.Nature methods · 2022Article
- Immunomagnetic microscopy of tumor tissues using quantum sensors in diamond.Proceedings of the National Academy of Sciences of the United States of America · 2022Article
- Full spectrum fluorescence lifetime imaging with 0.5 nm spectral and 50 ps temporal resolution.Nature communications · 2021Article
- Recent progress on single-molecule localization microscopy.Biophysics reports · 2021Article
- FiCoS: A fine-grained and coarse-grained GPU-powered deterministic simulator for biochemical networks.PLoS computational biology · 2021Article
- Molecular-scale axial localization by repetitive optical selective exposure.Nature methods · 2021Article
Corrections and comments
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We present a general purpose, open-source software library for estimation of non-linear parameters by the Levenberg-Marquardt algorithm. The software, Gpufit, runs on a Graphics Processing Unit (GPU) and executes computations in parallel, resulting in a significant gain in performance. We measured a speed increase of up to 42 times when comparing Gpufit with an identical CPU-based algorithm, with no loss of precision or accuracy. Gpufit is designed such that it is easily incorporated into existing applications or adapted for new ones. Multiple software interfaces, including to C, Python, and Matlab, ensure that Gpufit is accessible from most programming environments. The full source code is published as an open source software repository, making its function transparent to the user and facilitating future improvements and extensions. As a demonstration, we used Gpufit to accelerate an existing scientific image analysis package, yielding significantly improved processing times for super-resolution fluorescence microscopy datasets.
Identifiers
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.