Evidence map›Paper›PMID 29146946›Full record

ArticleScientific reports2017

De novo Transcriptome Sequencing of MeJA-Induced Taraxacum koksaghyz Rodin to Identify Genes Related to Rubber Formation.

XinWen Cao, Jie Yan, JiLiang Lei, Jin Li, JianBo Zhu, HuiYan Zhang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
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  7. Plants (Basel, Switzerland) · 2024
    Article
  8. Genome-Wide Analysis of theInternational journal of molecular sciences · 2024
    Article
  9. Article
  10. Functional Characterization ofPlants (Basel, Switzerland) · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Biosynthesis of Natural Rubber: Current State and Perspectives.International journal of molecular sciences · 2018
    Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

XinWen CaoCollege of Life Science, University of Shi He Zi, Xin Jiang, 832000, China.
Jie YanCollege of Life Science, University of Shi He Zi, Xin Jiang, 832000, China. 1653842328@qq.com.
JiLiang LeiCollege of Life Science, University of Shi He Zi, Xin Jiang, 832000, China.
Jin LiCollege of Life Science, University of Shi He Zi, Xin Jiang, 832000, China.
JianBo ZhuCollege of Life Science, University of Shi He Zi, Xin Jiang, 832000, China.
HuiYan ZhangCollege of Life Science, University of Shi He Zi, Xin Jiang, 832000, China.
Xinjiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Increase in the consumption of natural rubber (NR) has necessitated the identification of alternative sources of NR. The quality of NR produced by Taraxacum koksaghyz Rodin (TKS) is comparable to that from Hevea brasiliensis (H.brasiliensis), and therefore, TKS is being considered as an alternative source of NR. Here, we sequenced the TKS root transcriptome after wild TKS seedlings were treated with methyl jasmonate (MeJA) for 0, 6, and 24 h. The clean reads generated for each experimental line were assembled into 127,833 unigenes. The Kyoto encyclopedia of genes and genomes pathway prediction suggested that methyl jasmonate regulated secondary metabolism in TKS. Differential expression analysis showed that the expression of HMGCR, FPPS, IDI, GGPPS, and REF/SRPP increased with methyl jasmonate treatment. Interestingly, differential expression analysis of the jasmonate (JA)-related transcription factors (TFs), indicated that certain genes encoding these transcription factors (namely, bHLH, MYB, AP2/EREBP, and WRKY) showed the same expression pattern in the lines treated for 6 h and 24 h. Moreover, HMGCR was up-regulated in the transgenic seedlings overexpressing DREB. We predicted that methyl jasmonate regulated secondary metabolism and affected rubber biosynthesis via the interaction of the JA-related TFs with genes associated with rubber biosynthesis in TKS.

Indexed as

Genes, PlantSequence Analysis, RNAAcetatesalpha-Linolenic AcidCyclopentanesGene Expression ProfilingGene Expression Regulation, PlantMetabolic Networks and PathwaysMolecular Sequence AnnotationOxylipinsReproducibility of ResultsRubberSignal TransductionTaraxacumTranscriptomeAcetatesalpha-Linolenic AcidCyclopentanesmethyl jasmonateOxylipinsRubber

Identifiers

PMID29146946
PMCPMC5691164
OpenAlexW2768051078

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.