Evidence map›Paper›PMID 29146906›Full record

ArticleScientific reports2017

QTL mapping and molecular characterization of the classical D locus controlling seed and flower color in Linum usitatissimum (flax).

Gurudatt Pavagada Sudarshan, Manoj Kulkarni, Leonid Akhov, Paula Ashe, Hamid Shaterian, Sylvie Cloutier, Gordon Rowland, Yangdou Wei, Gopalan Selvaraj

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. History and prospects of flax genetic markers.Frontiers in plant science · 2024
    Review
  8. Article
  9. Article
  10. Review
  11. Genome-Wide Association Analysis of Mucilage and Hull Content in Flax (International journal of molecular sciences · 2018
    Article
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Gurudatt Pavagada SudarshanNational Research Council of Canada, 110 Gymnasium Place, Saskatoon, SK S7N 0W9, Canada.
Manoj KulkarniNational Research Council of Canada, 110 Gymnasium Place, Saskatoon, SK S7N 0W9, Canada.
Leonid AkhovNational Research Council of Canada, 110 Gymnasium Place, Saskatoon, SK S7N 0W9, Canada.
Paula AsheNational Research Council of Canada, 110 Gymnasium Place, Saskatoon, SK S7N 0W9, Canada.
Hamid ShaterianNational Research Council of Canada, 110 Gymnasium Place, Saskatoon, SK S7N 0W9, Canada.
Sylvie CloutierAgriculture and Agri-Food Canada, 960 Carling Avenue, Ottawa, ON K1A 0C6, Canada.ORCID 0000-0001-9934-5540
Gordon RowlandCrop Development Centre, Department of Plant Science, University of Saskatchewan, Agriculture Building, 51 Campus Drive, Saskatoon, SK S7N 5A8, Canada.
Yangdou WeiDepartment of Biology, University of Saskatchewan, 112 Science Place, Saskatoon, SK S7N 5E2, Canada.
Gopalan SelvarajNational Research Council of Canada, 110 Gymnasium Place, Saskatoon, SK S7N 0W9, Canada. gopalan.selvaraj@nrc.ca.
Saskatchewan Research Council (Canada) · CAUniversity of Saskatchewan · CAAgriculture and Agri-Food Canada · CANational Academies of Sciences, Engineering, and Medicine · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The flowers of flax (linseed) are blue-hued, ephemeral and self-pollinating, and the seeds are typically brown. A century-old interest in natural yellow seed variants and a historical model point to recessive alleles in B1, D and G loci being responsible, but the functional aspects had remained unknown. Here, we characterized the "D" locus by quantitative trait loci (QTL) mapping and identified a FLAVONOID 3'5' HYDROXYLASE (F3'5'H) gene therein. It does not belong to the F3'5'H clade, but resembles biochemically characterized F3'Hs (flavonoid 3' hydroxylase) but without F3'H activity. The genome lacks other F3'H or F3'H-like genes. The apparent neo-functionalization from F3'H is associated with a Thr

Indexed as

Genetic LociAllelesAmino Acid SequenceChromosome MappingCodon, NonsenseCytochrome P-450 Enzyme SystemFlaxFlowersHydroxylationMutationPhenotypePigmentationProanthocyanidinsQuantitative Trait LociSeedsCodon, NonsenseCytochrome P-450 Enzyme Systemflavonoid 3'-hydroxylaseProanthocyanidins

Identifiers

PMID29146906
PMCPMC5691222
OpenAlexW2767959263

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.