Evidence map›Paper›PMID 29146185›Full record

ArticleBiochemical and biophysical research communications2018

Biomarker identification for statin sensitivity of cancer cell lines.

Vineet K Raghu, Colin H Beckwitt, Katsuhiko Warita, Alan Wells, Panayiotis V Benos, Zoltán N Oltvai

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.

  1. Pooled it
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  18. Pleiotropic effects of statins: A focus on cancer.Biochimica et biophysica acta. Molecular basis of disease · 2020
    Review
  19. Article
  20. Statins in risk-reduction and treatment of cancer.World journal of clinical oncology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Vineet K RaghuDepartment of Computational & Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA; Department of Computer Science, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Colin H BeckwittDepartment of Pathology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA.
Katsuhiko WaritaDepartment of Veterinary Anatomy, School of Veterinary Medicine, Tottori University, Tottori 680-8553, Japan.
Alan WellsDepartment of Computational & Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA; Department of Pathology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA; University of Pittsburgh Cancer Institute, Pittsburgh, PA 15213, USA.
Panayiotis V BenosDepartment of Computational & Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA; Department of Computer Science, University of Pittsburgh, Pittsburgh, PA 15213, USA. Electronic address: benos@pitt.edu.
Zoltán N OltvaiDepartment of Computational & Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA; Department of Pathology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA. Electronic address: oltvai@pitt.edu.
University of Pittsburgh · USTottori University · JP

Funding

Training in Cellular & Molecular Mechanisms of Tumor RejectionT32CA082084 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Robert J Binder, Dario AA Vignali · 1999 to 2026
$9.2M
Cellular Approaches to Tissue Engineering/RegenerationT32EB001026 · NIBIB · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DUNCAN, ANDREW W, MONGA, SATDARSHAN SINGH · 2003 to 2024
$5.5M
Probing the Role of the Tumor Microenvironment on Mechanistic Biomarkers for Chemotherapeutic ResistanceUH3TR000496 · NCATS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GRIFFITH, LINDA G · 2014 to 2016
$3.5M
All-Human Microphysical Model of Metastasis TherapyUH2TR000496 · NCATS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GRIFFITH, LINDA G · 2012 to 2013
$2.3M
Systems Level Causal Discovery in Heterogeneous TOPMed DataU01HL137159 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BENOS, PANAGIOTIS V, SCIURBA, FRANK · 2017 to 2019
$1.8M
INTEGRATIVE GRAPHICAL MODELS FOR LARGE MULTI-MODAL BIOMEDICAL DATAR01LM012087 · NLM · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BENOS, PANAGIOTIS V, GLYMOUR, CLARK · 2015 to 2018
$1.3M
Oxygen impact on tumor metastasis dormancy and therapyF30CA199947 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BECKWITT, COLIN HENRY · 2016 to 2018
$142k
Molecular Regulation of Breast Cancer ProgressionI01BX003368 · VA · VETERANS HEALTH ADMINISTRATION · PI WELLS, ALAN · 2016 to 2023
–
BLRD VA I01 BX003368NCATS NIH HHS UH2 TR000496NCATS NIH HHS UH3 TR000496NCI NIH HHS F30 CA199947NCI NIH HHS T32 CA082084NHLBI NIH HHS U01 HL137159NIBIB NIH HHS T32 EB001026NLM NIH HHS R01 LM012087
6 · The paper itself

Abstract

Statins are potent cholesterol reducing drugs that have been shown to reduce tumor cell proliferation in vitro and tumor growth in animal models. Moreover, retrospective human cohort studies demonstrated decreased cancer-specific mortality in patients taking statins. We previously implicated membrane E-cadherin expression as both a marker and mechanism for resistance to atorvastatin-mediated growth suppression of cancer cells; however, a transcriptome-profile-based biomarker signature for statin sensitivity has not yet been reported. Here, we utilized transcriptome data from fourteen NCI-60 cancer cell lines and their statin dose-response data to produce gene expression signatures that identify statin sensitive and resistant cell lines. We experimentally confirmed the validity of the identified biomarker signature in an independent set of cell lines and extended this signature to generate a proposed statin-sensitive subset of tumors listed in the TCGA database. Finally, we predicted drugs that would synergize with statins and found several predicted combination therapies to be experimentally confirmed. The combined bioinformatics-experimental approach described here can be used to generate an initial biomarker signature for anticancer drug therapy.

Indexed as

Antineoplastic AgentsBiomarkers, TumorCell Line, TumorDatabases, ProteinDose-Response Relationship, DrugDrug DiscoveryDrug Screening Assays, AntitumorHumansHydroxymethylglutaryl-CoA Reductase InhibitorsNeoplasmsTreatment OutcomeAntineoplastic AgentsBiomarkers, TumorHydroxymethylglutaryl-CoA Reductase InhibitorsBiomarkersGraphical modelsStatin

Identifiers

PMID29146185
PMCPMC5827944
OpenAlexW2951118605

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.