Evidence map›Paper›PMID 29143866›Full record

ArticleMolecular genetics and genomics : MGG2018

Haplotype analysis of the germacrene A synthase gene and association with cynaropicrin content and biological activities in Cynara cardunculus.

Ana Margarida Ferro, Patrícia Ramos, Ângela Guerra, Paula Parreira, Teresa Brás, Olinda Guerreiro, Eliana Jerónimo, Carmen Capel, Juan Capel, Fernando J Yuste-Lisbona and 4 more

Abstract read
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In one paragraph

Article in Molecular genetics and genomics : MGG, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 8 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Ana Margarida FerroCentro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo (CEBAL), Instituto Politécnico de Beja (IPBeja), Rua Pedro Soares, 7801-908, Beja, Portugal.
Patrícia RamosCentro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo (CEBAL), Instituto Politécnico de Beja (IPBeja), Rua Pedro Soares, 7801-908, Beja, Portugal.
Ângela GuerraCentro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo (CEBAL), Instituto Politécnico de Beja (IPBeja), Rua Pedro Soares, 7801-908, Beja, Portugal.
Paula ParreiraCentro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo (CEBAL), Instituto Politécnico de Beja (IPBeja), Rua Pedro Soares, 7801-908, Beja, Portugal.
Teresa BrásCentro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo (CEBAL), Instituto Politécnico de Beja (IPBeja), Rua Pedro Soares, 7801-908, Beja, Portugal.
Olinda GuerreiroCentro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo (CEBAL), Instituto Politécnico de Beja (IPBeja), Rua Pedro Soares, 7801-908, Beja, Portugal.
Eliana JerónimoCentro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo (CEBAL), Instituto Politécnico de Beja (IPBeja), Rua Pedro Soares, 7801-908, Beja, Portugal.
Carmen CapelCentro de Investigación en Biotecnología Agroalimentaria (BITAL), Universidad de Almería, 04120, Almeria, Spain.
Juan CapelCentro de Investigación en Biotecnología Agroalimentaria (BITAL), Universidad de Almería, 04120, Almeria, Spain.
Fernando J Yuste-LisbonaCentro de Investigación en Biotecnología Agroalimentaria (BITAL), Universidad de Almería, 04120, Almeria, Spain.
Maria F DuarteCentro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo (CEBAL), Instituto Politécnico de Beja (IPBeja), Rua Pedro Soares, 7801-908, Beja, Portugal.
Rafael LozanoCentro de Investigación en Biotecnología Agroalimentaria (BITAL), Universidad de Almería, 04120, Almeria, Spain.
M Margarida OliveiraInstituto de Tecnologia Química e Biológica António Xavier (ITQB), Universidade Nova de Lisboa, Av. da República, 2781-901, Oeiras, Portugal.
Sónia GonçalvesCentro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo (CEBAL), Instituto Politécnico de Beja (IPBeja), Rua Pedro Soares, 7801-908, Beja, Portugal. sonia.goncalves@cebal.pt.
Centro de Biotecnologia Agrícola e Agro Alimentar do Alentejo · PTUniversity of Almería · ESInstituto Politécnico de Beja · PTUniversidade Nova de Lisboa · PTUniversity of Lisbon · PT

Funding

FEDER ALT20-03-0145-FEDER-000038Fundação para a Ciência e a Tecnologia Programa Ciência 2008Fundação para a Ciência e a Tecnologia SFRH/BD/110969/2015Fundação para a Ciência e a Tecnologia SFRH/BD/68847/2010Fundação para a Ciência e a Tecnologia SFRH/BD/70845/2010Fundação para a Ciência e a Tecnologia SFRH/BD/84406/2012Fundação para a Ciência e a Tecnologia SFRH/BD/98635/2013GREEN-it UID/Multi/04551/2013Junta de Andalucía P12-AGR-1482
6 · The paper itself

Abstract

Cynara cardunculus: L. represents a natural source of terpenic compounds, with the predominant molecule being cynaropicrin. Cynaropicrin is gaining interest since it has been correlated to anti-hyperlipidaemia, antispasmodic and cytotoxicity activity against leukocyte cancer cells. The objective of this work was to screen a collection of C. cardunculus, from different origins, for new allelic variants in germacrene A synthase (GAS) gene involved in the cynaropicrin biosynthesis and correlate them with improved cynaropicrin content and biological activities. Using high-resolution melting, nine haplotypes were identified. The putative impact of the identified allelic variants in GAS protein was evaluated by bioinformatic tools and polymorphisms that putatively lead to protein conformational changes were described. Additionally, cynaropicrin and main pentacyclic triterpenes contents, and antithrombin, antimicrobial and antiproliferative activities were also determined in C. cardunculus leaf lipophilic-derived extracts. In this work we identified allelic variants with putative impact on GAS protein, which are significantly associated with cynaropicrin content and antiproliferative activity. The results obtained suggest that the identified polymorphisms should be explored as putative genetic markers correlated with biological properties in Cynara cardunculus.

Indexed as

HaplotypesAlkyl and Aryl TransferasesBacteriaCell Line, TumorCell SurvivalCynaraGene FrequencyHumansLactonesMicrobial Sensitivity TestsPhylogenyPlant ExtractsPlant LeavesPlant ProteinsPolymorphism, Single NucleotideSesquiterpenesAlkyl and Aryl TransferasescynaropicrinLactonesPlant ExtractsPlant ProteinsSesquiterpenesTriterpenesAssociation analysisBiological activitiesCynara cardunculusCynaropicrinGermacrene A synthaseSingle nucleotide polymorphisms

Identifiers

PMID29143866
OpenAlexW2770834521

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.