Evidence map›Paper›PMID 29142438›Full record

ArticlePharmacognosy magazine2017

Molecular Simulation-based Combinatorial Modeling and Antioxidant Activities of Zingiberaceae Family Rhizomes.

Talambedu Usha, Sushen Pradhan, Arvind Kumar Goyal, Shanmugarajan Dhivya, H P Prashanth Kumar, Manoj Kumar Singh, Neelu Joshi, Bharat Chandra Basistha, K R Siddalinga Murthy, Saravanakumar Selvaraj and 1 more

Abstract read
In one paragraph

Article in Pharmacognosy magazine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Uncharted Source of Medicinal Products: The Case of theMedicines (Basel, Switzerland) · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Talambedu UshaDBT-BIF Facility, Biotechnology Finishing School, Science Research Centre, Maharani Lakshmi Ammanni College for Women, Bengaluru, Karnataka, India.
Sushen PradhanSikkim State Council of Science and Technology, Gangtok, Sikkim, India.
Arvind Kumar GoyalCentre for Bamboo Studies, Department of Biotechnology, Bodoland University, Kokrajhar, Assam, India.
Shanmugarajan DhivyaDBT-BIF Facility, Biotechnology Finishing School, Science Research Centre, Maharani Lakshmi Ammanni College for Women, Bengaluru, Karnataka, India.
H P Prashanth KumarDepartment of Biotechnology, Sapthagiri College of Engineering, Bengaluru, Karnataka, India.
Manoj Kumar SinghDepartment of Biotechnology, Kumaun University, Nainital, Uttarakhand, India.
Neelu JoshiDepartment of Biotechnology, Kumaun University, Nainital, Uttarakhand, India.
Bharat Chandra BasisthaSikkim State Council of Science and Technology, Gangtok, Sikkim, India.
K R Siddalinga MurthyDepartment of Biochemistry, Bangalore University, Bengaluru, Karnataka, India.
Saravanakumar SelvarajCentre for Pharmacology and Toxicology, Hannover Medical School, 30625 Hannover, Germany.
Sushil Kumar MiddhaDBT-BIF Facility, Biotechnology Finishing School, Science Research Centre, Maharani Lakshmi Ammanni College for Women, Bengaluru, Karnataka, India.
Kumaun University · INState Council of Science and Technology for Sikkim · INBangalore University · INBodoland University · INMedizinische Hochschule Hannover · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveThe main aim of this scientific report was to investigate a series of phytochemicals MATERIALS AND

methodsUsing the methanolic extracts of herbs, quantitative detection of phytochemicals such as total phenols and total flavonoids was detected, and the free radical scavenging activity was also studied using 2,2-diphenyl-1-picryl-hydrazyl (DPPH) assay. Docking process was studied, using Discovery Studio version 3.5, to identify suitable molecules at the protein-binding sites through annealing and genetic simulation algorithms. Grids centered on active sites were obtained with spacing of 54 × 55 × 56, and 0.503 grid spacing was calculated. The methods adopted and used in this study were comparisons of Global and Local Search Methods to determine the parameters such as maximum number of 250,000 energy evaluations as well as generations of 27,000, followed by mutation and crossover rates of 0.02 and 0.80. The number of docking runs was set to 10. Molecular dynamics study was done to check the stability of the complex.

resultsAmong all the genus of Zingiberaceae family investigated in this study,

conclusionBased on the current available literature, this is the first study to understand the interaction of compounds found in the rhizomes of Zingiberaceae family. SUMMARY: The aqueous methanolic extract of Zingiberaceae family

Indexed as

CADDcancerCurcumamolecular dynamicsZingiberaceae

Identifiers

PMID29142438
PMCPMC5669121
OpenAlexW2761445601

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.