Evidence map›Paper›PMID 29142305›Full record

ArticleNature communications2017

Assay interference and off-target liabilities of reported histone acetyltransferase inhibitors.

Jayme L Dahlin, Kathryn M Nelson, Jessica M Strasser, Dalia Barsyte-Lovejoy, Magdalena M Szewczyk, Shawna Organ, Matthew Cuellar, Gurpreet Singh, Jonathan H Shrimp, Nghi Nguyen and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Targeting lysine acetylation readers and writers.Nature reviews. Drug discovery · 2025
    Review
  8. Article
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  11. Article
  12. Transcriptional elongation control of hypoxic response.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. EP300 as a Molecular Integrator of Fibrotic Transcriptional Programs.International journal of molecular sciences · 2023
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Jayme L DahlinDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, 02115, USA.ORCID http://orcid.org/0000-0003-4151-9944
Kathryn M NelsonInstitute for Therapeutics Discovery and Development, University of Minnesota, Minneapolis, MN, 55414, USA.ORCID http://orcid.org/0000-0001-8274-2064
Jessica M StrasserInstitute for Therapeutics Discovery and Development, University of Minnesota, Minneapolis, MN, 55414, USA.ORCID http://orcid.org/0000-0002-6454-4299
Dalia Barsyte-LovejoyStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada, M5G 1L7.
Magdalena M SzewczykStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada, M5G 1L7.
Shawna OrganStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada, M5G 1L7.
Matthew CuellarInstitute for Therapeutics Discovery and Development, University of Minnesota, Minneapolis, MN, 55414, USA.ORCID http://orcid.org/0000-0003-3365-2120
Gurpreet SinghInstitute for Therapeutics Discovery and Development, University of Minnesota, Minneapolis, MN, 55414, USA.
Jonathan H ShrimpChemical Biology Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick, MD, 21702, USA.ORCID http://orcid.org/0000-0001-9872-942X
Nghi NguyenMedicinal Chemistry Theme, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, VIC, 3052, Australia.ORCID http://orcid.org/0000-0001-7496-7300
Jordan L MeierChemical Biology Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick, MD, 21702, USA.ORCID http://orcid.org/0000-0002-0537-7101
Cheryl H ArrowsmithStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada, M5G 1L7.
Peter J BrownStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada, M5G 1L7.
Jonathan B BaellMedicinal Chemistry Theme, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, VIC, 3052, Australia.ORCID http://orcid.org/0000-0003-2114-8242
Michael A WaltersInstitute for Therapeutics Discovery and Development, University of Minnesota, Minneapolis, MN, 55414, USA. mwalters@umn.edu.ORCID http://orcid.org/0000-0001-5650-9277

Funding

Targeting Cancer Through Modifications and MetabolismZIABC011488 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MEIER, JORDAN L · 2013 to 2025
$21.3M
Wellcome Trust
6 · The paper itself

Abstract

Many compounds with potentially reactive chemical motifs and poor physicochemical properties are published as selective modulators of biomolecules without sufficient validation and then propagated in the scientific literature as useful chemical probes. Several histone acetyltransferase (HAT) inhibitors with these liabilities are now routinely used to probe epigenetic pathways. We profile the most commonly used HAT inhibitors and confirm that the majority of them are nonselective interference compounds. Most (15 out of 23, 65%) of the inhibitors are flagged by ALARM NMR, an industry-developed counter-screen for promiscuous compounds. Biochemical counter-screens confirm that most of these compounds are either thiol-reactive or aggregators. Selectivity panels show many of these compounds modulate unrelated targets in vitro, while several also demonstrate nonspecific effects in cell assays. These data demonstrate the usefulness of performing counter-screens for bioassay promiscuity and assay interference, and raise caution about the utility of many widely used, but insufficiently validated, compounds employed in chemical biology.

Indexed as

Cell SurvivalDrug DiscoveryEnzyme InhibitorsHEK293 CellsHigh-Throughput Screening AssaysHistone AcetyltransferasesHumansMagnetic Resonance SpectroscopyMCF-7 CellsMolecular StructureSulfhydryl CompoundsEnzyme InhibitorsHistone AcetyltransferasesSulfhydryl Compounds

Identifiers

PMID29142305
PMCPMC5688144

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.