Evidence map›Paper›PMID 29142241›Full record

ArticleNature communications2017

Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients.

Alyse K Hawley, Masaru K Nobu, Jody J Wright, W Evan Durno, Connor Morgan-Lang, Brent Sage, Patrick Schwientek, Brandon K Swan, Christian Rinke, Monica Torres-Beltrán and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Nitrate-Nitrite Interplay in the Nitrogen Biocycle.Molecules (Basel, Switzerland) · 2025
    Review
  6. Article
  7. How genomics can help unravel the evolution of endophytic fungi.World journal of microbiology & biotechnology · 2025
    Review
  8. Review
  9. Nitrous oxide production via enzymatic nitroxyl from the nitrifying archaeonProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Article
  11. Article
  12. International journal of systematic and evolutionary microbiology · 2024
    Article
  13. Article
  14. Article
  15. 3D intrusions transport active surface microbial assemblages to the dark ocean.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Alyse K HawleyDepartment of Microbiology and Immunology, University of British Columbia, Vancouver, BC, V6T 1Z3, Canada.ORCID http://orcid.org/0000-0002-3516-4043
Masaru K NobuDepartment of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, 205 North Mathews Avenue, Urbana, IL, 61801, USA.
Jody J WrightDepartment of Microbiology and Immunology, University of British Columbia, Vancouver, BC, V6T 1Z3, Canada.
W Evan DurnoGraduate Program in Bioinformatics, University of British Columbia, Vancouver, BC, Canada.
Connor Morgan-LangGraduate Program in Bioinformatics, University of British Columbia, Vancouver, BC, Canada.
Brent SageGraduate Program in Bioinformatics, University of British Columbia, Vancouver, BC, Canada.
Patrick SchwientekDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Brandon K SwanBigelow Laboratory for Ocean Sciences, East Boothbay, ME, 04544, USA.
Christian RinkeAustralian Centre for Ecogenomics, University of Queensland, St Lucia, Brisbane, 4072, QLD, Australia.ORCID http://orcid.org/0000-0003-4632-1187
Monica Torres-BeltránDepartment of Microbiology and Immunology, University of British Columbia, Vancouver, BC, V6T 1Z3, Canada.
Keith MewisGenome Science and Technology Graduate Program, University of British Columbia, Vancouver, BC, Canada.
Wen-Tso LiuDepartment of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, 205 North Mathews Avenue, Urbana, IL, 61801, USA.
Ramunas StepanauskasBigelow Laboratory for Ocean Sciences, East Boothbay, ME, 04544, USA.ORCID http://orcid.org/0000-0003-4458-3108
Tanja WoykeDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.ORCID http://orcid.org/0000-0002-9485-5637
Steven J HallamDepartment of Microbiology and Immunology, University of British Columbia, Vancouver, BC, V6T 1Z3, Canada. shallam@mail.ubc.ca.ORCID http://orcid.org/0000-0002-4889-6876

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbial communities drive biogeochemical cycles through networks of metabolite exchange that are structured along energetic gradients. As energy yields become limiting, these networks favor co-metabolic interactions to maximize energy disequilibria. Here we apply single-cell genomics, metagenomics, and metatranscriptomics to study bacterial populations of the abundant "microbial dark matter" phylum Marinimicrobia along defined energy gradients. We show that evolutionary diversification of major Marinimicrobia clades appears to be closely related to energy yields, with increased co-metabolic interactions in more deeply branching clades. Several of these clades appear to participate in the biogeochemical cycling of sulfur and nitrogen, filling previously unassigned niches in the ocean. Notably, two Marinimicrobia clades, occupying different energetic niches, express nitrous oxide reductase, potentially acting as a global sink for the greenhouse gas nitrous oxide.

Indexed as

BacteriaBacterial ProteinsEnergy MetabolismGene Expression ProfilingGene Expression Regulation, BacterialGenome, BacterialGenomicsMetagenomeMetagenomicsPhylogenySingle-Cell AnalysisThermodynamicsBacterial Proteins

Identifiers

PMID29142241
PMCPMC5688066

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.