Evidence map›Paper›PMID 29142202›Full record

ArticleScientific reports2017

Genomic mosaicism in paternal sperm and multiple parental tissues in a Dravet syndrome cohort.

Xiaoxu Yang, Aijie Liu, Xiaojing Xu, Xiaoling Yang, Qi Zeng, Adam Yongxin Ye, Zhe Yu, Sheng Wang, August Yue Huang, Xiru Wu and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it, 67 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Case Report of Suspected Gonadal Mosaicism inInternational journal of molecular sciences · 2024
    Article
  7. International journal of molecular sciences · 2024
    Article
  8. [Sperm Mosaic Variants and Their Influence on the Offspring].Sichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition · 2024
    Review
  9. Article
  10. Article
  11. Review
  12. Germline mosaicism for a disease-causing mutation in the ATP1A3 gene in a Chinese family.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Detection of Very Low-Level Somatic MosaicFrontiers in medicine · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Xiaoxu YangCenter for Bioinformatics, State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, 100871, China.ORCID 0000-0003-0219-0023
Aijie LiuDepartment of Pediatrics, Peking University First Hospital, Beijing, 100034, China.
Xiaojing XuDepartment of Pediatrics, Peking University First Hospital, Beijing, 100034, China.
Xiaoling YangDepartment of Pediatrics, Peking University First Hospital, Beijing, 100034, China.
Qi ZengDepartment of Pediatrics, Peking University First Hospital, Beijing, 100034, China.
Adam Yongxin YeCenter for Bioinformatics, State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, 100871, China.
Zhe YuPeking-Tsinghua Center for Life Sciences, Beijing, 100871, China.
Sheng WangNational Institute of Biological Sciences, Beijing, 102206, China.
August Yue HuangCenter for Bioinformatics, State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, 100871, China.
Xiru WuDepartment of Pediatrics, Peking University First Hospital, Beijing, 100034, China.
Qixi WuPeking-Tsinghua Center for Life Sciences, Beijing, 100871, China. wuqx@pku.edu.cn.
Liping WeiCenter for Bioinformatics, State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, 100871, China. weilp@pku.edu.cn.
Yuehua ZhangDepartment of Pediatrics, Peking University First Hospital, Beijing, 100034, China. zhangyhdr@126.com.
Peking University · CNNational Institute of Biological Sciences, Beijing · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genomic mosaicism in parental gametes and peripheral tissues is an important consideration for genetic counseling. We studied a Chinese cohort affected by a severe epileptic disorder, Dravet syndrome (DS). There were 56 fathers who donated semen and 15 parents who donated multiple peripheral tissue samples. We used an ultra-sensitive quantification method, micro-droplet digital PCR (mDDPCR), to detect parental mosaicism of the proband's pathogenic mutation in SCN1A, the causal gene of DS in 112 families. Ten of the 56 paternal sperm samples were found to exhibit mosaicism of the proband's mutations, with mutant allelic fractions (MAFs) ranging from 0.03% to 39.04%. MAFs in the mosaic fathers' sperm were significantly higher than those in their blood (p = 0.00098), even after conditional probability correction (p' = 0.033). In three mosaic fathers, ultra-low fractions of mosaicism (MAF < 1%) were detected in the sperm samples. In 44 of 45 cases, mosaicism was also observed in other parental peripheral tissues. Hierarchical clustering showed that MAFs measured in the paternal sperm, hair follicles and urine samples were clustered closest together. Milder epileptic phenotypes were more likely to be observed in mosaic parents (p = 3.006e-06). Our study provides new insights for genetic counseling.

Indexed as

MosaicismEpilepsies, MyoclonicEpilepsyFathersFemaleGenome, HumanGenomicsHumansMaleMutationNAV1.1 Voltage-Gated Sodium ChannelParentsPedigreePhenotypeSpermatozoaNAV1.1 Voltage-Gated Sodium ChannelSCN1A protein, human

Identifiers

PMID29142202
PMCPMC5688122
OpenAlexW2767346047

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.