Evidence map›Paper›PMID 29140992›Full record

ArticlePloS one2017

Transcriptome profile of lung dendritic cells after in vitro porcine reproductive and respiratory syndrome virus (PRRSV) infection.

Maren Julia Pröll, Christiane Neuhoff, Karl Schellander, Muhammad Jasim Uddin, Mehmet Ulas Cinar, Sudeep Sahadevan, Xueqi Qu, Md Aminul Islam, Mikhael Poirier, Marcel A Müller and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 18 citations in OpenAlex.

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  15. Transcriptional Profiling of Host Cell Responses to VirulentInternational journal of molecular sciences · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 5 countries.

Maren Julia PröllInstitute of Animal Science, Department of Animal Breeding and Husbandry, University of Bonn, Bonn, Germany.
Christiane NeuhoffInstitute of Animal Science, Department of Animal Breeding and Husbandry, University of Bonn, Bonn, Germany.
Karl SchellanderInstitute of Animal Science, Department of Animal Breeding and Husbandry, University of Bonn, Bonn, Germany.
Muhammad Jasim UddinSchool of Veterinary Science, The University of Queensland, Gatton Campus, Gatton, Australia.
Mehmet Ulas CinarDepartment of Animal Science, Faculty of Agriculture, Erciyes University, Kayseri, Turkey.
Sudeep SahadevanBRIC - Biotech Research & Innovation Centre, University of Copenhagen, Copenhagen, Denmark.
Xueqi QuLaboratory for Gene and Cell Engineering, Institute of Biomedicine and Biotechnology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
Md Aminul IslamInstitute of Animal Science, Department of Animal Breeding and Husbandry, University of Bonn, Bonn, Germany.
Mikhael PoirierInstitute of Animal Science, Department of Animal Breeding and Husbandry, University of Bonn, Bonn, Germany.
Marcel A MüllerInstitute of Virology, Helmut-Ruska-Haus, Charité Medical School, Berlin, Germany.
Christian DrostenInstitute of Virology, Helmut-Ruska-Haus, Charité Medical School, Berlin, Germany.
Dawit TesfayeInstitute of Animal Science, Department of Animal Breeding and Husbandry, University of Bonn, Bonn, Germany.
Ernst TholenInstitute of Animal Science, Department of Animal Breeding and Husbandry, University of Bonn, Bonn, Germany.
Christine Große-BrinkhausInstitute of Animal Science, Department of Animal Breeding and Husbandry, University of Bonn, Bonn, Germany.
University of Bonn · DECharité - Universitätsmedizin Berlin · DEErciyes University · TRMSB Medical School Berlin · DEShenzhen Institutes of Advanced Technology · CNUniversity of Copenhagen · DKUniversity of Queensland · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The porcine reproductive and respiratory syndrome (PRRS) is an infectious disease that leads to high financial and production losses in the global swine industry. The pathogenesis of this disease is dependent on a multitude of factors, and its control remains problematic. The immune system generally defends against infectious diseases, especially dendritic cells (DCs), which play a crucial role in the activation of the immune response after viral infections. However, the understanding of the immune response and the genetic impact on the immune response to PRRS virus (PRRSV) remains incomplete. In light of this, we investigated the regulation of the host immune response to PRRSV in porcine lung DCs using RNA-sequencing (RNA-Seq). Lung DCs from two different pig breeds (Pietrain and Duroc) were collected before (0 hours) and during various periods of infection (3, 6, 9, 12, and 24 hours post infection (hpi)). RNA-Seq analysis revealed a total of 20,396 predicted porcine genes, which included breed-specific differentially expressed immune genes. Pietrain and Duroc infected lung DCs showed opposite gene expression courses during the first time points post infection. Duroc lung DCs reacted more strongly and distinctly than Pietrain lung DCs during these periods (3, 6, 9, 12 hpi). Additionally, cluster analysis revealed time-dependent co-expressed groups of genes that were involved in immune-relevant pathways. Key clusters and pathways were identified, which help to explain the biological and functional background of lung DCs post PRRSV infection and suggest IL-1β1 as an important candidate gene. RNA-Seq was also used to characterize the viral replication of PRRSV for each breed. PRRSV was able to infect and to replicate differently in lung DCs between the two mentioned breeds. These results could be useful in investigations on immunity traits in pig breeding and enhancing the health of pigs.

Indexed as

TranscriptomeAnimalsDendritic CellsFemaleGene Expression ProfilingHost-Pathogen InteractionsMultigene FamilyPorcine Reproductive and Respiratory SyndromePorcine respiratory and reproductive syndrome virusSwine

Identifiers

PMID29140992
PMCPMC5687707
OpenAlexW2768673403

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.