Evidence map›Paper›PMID 29140975›Full record

ArticlePLoS genetics2017

Natural variation of a sensor kinase controlling a conserved stress response pathway in Escherichia coli.

Manuela Roggiani, Srujana S Yadavalli, Mark Goulian

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

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  11. Gain-of-Function Mutations in Acid Stress Response (Antimicrobial agents and chemotherapy · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Manuela RoggianiDepartment of Biology, University of Pennsylvania, Philadelphia, PA, United States of America.ORCID http://orcid.org/0000-0002-8564-036X
Srujana S YadavalliDepartment of Biology, University of Pennsylvania, Philadelphia, PA, United States of America.
Mark GoulianDepartment of Biology, University of Pennsylvania, Philadelphia, PA, United States of America.ORCID http://orcid.org/0000-0003-0076-023X
University of Pennsylvania · US

Funding

Regulation of Bacterial Two-Component Signaling by Small Membrane ProteinsR01GM080279 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GOULIAN, MARK D · 2007 to 2020
$3.7M
NIGMS NIH HHS R01 GM080279
6 · The paper itself

Abstract

Previous studies have shown that exponentially growing Escherichia coli can detect mild acidity (~pH 5.5) and, in response, synthesize enzymes that protect against severe acid shock. This adaptation is controlled by the EvgS/EvgA phosphorelay, a signal transduction system present in virtually every E. coli isolate whose genome has been sequenced. Here we show that, despite this high level of conservation, the EvgS/EvgA system displays a surprising natural variation in pH-sensing capacity, with some strains entirely non-responsive to low pH stimulus. In most cases that we have tested, however, activation of the EvgA regulon still confers acid resistance. From analyzing selected E. coli isolates, we find that the natural variation results from polymorphisms in the sensor kinase EvgS. We further show that this variation affects the pH response of a second kinase, PhoQ, which senses pH differently from the closely related PhoQ in Salmonella enterica. The within-species diversification described here suggests EvgS likely responds to additional input signals that may be correlated with acid stress. In addition, this work highlights the fact that even for highly conserved sensor kinases, the activities identified from a subset of isolates may not necessarily generalize to other members of the same bacterial species.

Indexed as

Gene Expression Regulation, BacterialRegulonEscherichia coliEscherichia coli ProteinsHydrogen-Ion ConcentrationProtein KinasesSalmonella entericaSequence AlignmentSignal TransductionTranscription FactorsEscherichia coli ProteinsEvgA protein, E coliEvgS protein, E coliPhoQ protein, E coliProtein KinasesTranscription Factors

Identifiers

PMID29140975
PMCPMC5706723
OpenAlexW2770562910

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.