Evidence map›Paper›PMID 29139476›Full record

ArticleMucosal immunology2018

Detection of HIV-1-specific gastrointestinal tissue resident CD8

Brenna E Kiniry, Shengbin Li, Anupama Ganesh, Peter W Hunt, Ma Somsouk, Pamela J Skinner, Steven G Deeks, Barbara L Shacklett

Open access · bronzeAbstract read
In one paragraph

Article in Mucosal immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it, 59 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. CD8MedComm · 2026
    Review
  4. Gastrointestinal MAIT cells in chronic HIV-1 infection.Journal of immunology (Baltimore, Md. : 1950) · 2026
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. Article
  20. HIV specific CD8Frontiers in immunology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Brenna E KiniryDepartment of Medical Microbiology and Immunology, School of Medicine, University of California, Davis, California, USA.
Shengbin LiDepartment of Veterinary and Biomedical Sciences, University of Minnesota, Minneapolis, Minnesota, USA.
Anupama GaneshDepartment of Medical Microbiology and Immunology, School of Medicine, University of California, Davis, California, USA.
Peter W HuntDivision of Experimental Medicine, Department of Medicine, Zuckerberg San Francisco General Hospital, UCSF, San Francisco, California, USA.
Ma SomsoukDivision of Gastroenterology, Department of Medicine, Zuckerberg San Francisco General Hospital, UCSF, San Francisco, California, USA.
Pamela J SkinnerDepartment of Veterinary and Biomedical Sciences, University of Minnesota, Minneapolis, Minnesota, USA.
Steven G DeeksPositive Health Program, Department of Medicine, Zuckerberg San Francisco General Hospital, UCSF, San Francisco, California, USA.
Barbara L ShacklettDepartment of Medical Microbiology and Immunology, School of Medicine, University of California, Davis, California, USA.
San Francisco General Hospital · USUniversity of California, Davis · USUniversity of Minnesota · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Viral reservoirs and sanctuaries in HAART - treated patients: role and mechanismsU19AI096109 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PALMER, SARAH ELIZABETH · 2011 to 2015
$29.5M
HIV-Specific T Cell Responses in Rectal MucosaR01AI057020 · NIAID · UNIVERSITY OF CALIFORNIA DAVIS · PI SHACKLETT, BARBARA L. · 2003 to 2016
$6.2M
Preventing the Establishment of Enfuvirtide-resistance in the Latent ReservoirK24AI069994 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEEKS, STEVEN GRANT · 2007 to 2016
$1.5M
UC Davis Shared Astrios Cell SorterS10OD018223 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SHACKLETT, BARBARA L. · 2015 to 2015
$555k
Shared LSRII Cytometer Equipment Application - UC Davis Stem Cell ProgramS10RR026825 · NCRR · UNIVERSITY OF CALIFORNIA AT DAVIS · PI NOLTA, JAN A. · 2010 to 2010
$500k
EXTRAMURAL RESEARCH FACILITIES CONSTRUCTIONC06RR012088 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI CURRY, FITZ-ROY E · 1996 to 1996
–
NCRR NIH HHS C06 RR012088NCRR NIH HHS S10 RR026825NIAID NIH HHS K24 AI069994NIAID NIH HHS P30 AI027763NIAID NIH HHS R01 AI057020NIAID NIH HHS U19 AI096109NIH HHS S10 OD018223
6 · The paper itself

Abstract

Tissue-resident memory (T

Indexed as

AIDS VaccinesAntigens, CDAsymptomatic DiseasesCD8-Positive T-LymphocytesChronic DiseaseCytotoxicity, ImmunologicGastrointestinal TractHIV-1HIV InfectionsHumansImmunologic MemoryImmunophenotypingIntegrin alpha ChainsLymphocyte CountOrgan SpecificityT-Box Domain ProteinsAIDS Vaccinesalpha E integrinsAntigens, CDEOMES protein, humanIntegrin alpha ChainsT-Box Domain Proteins

Identifiers

PMID29139476
PMCPMC5953759
OpenAlexW2769328785

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.