Evidence map›Paper›PMID 29139326›Full record

ArticleCell cycle (Georgetown, Tex.)2018

DNA polymerase η mutational signatures are found in a variety of different types of cancer.

Igor B Rogozin, Alexander Goncearenco, Artem G Lada, Subhajyoti De, Vyacheslav Yurchenko, German Nudelman, Anna R Panchenko, David N Cooper, Youri I Pavlov

Open access · bronzeAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 38 citations in OpenAlex.

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  20. Involvement of Rev1 in alkylating agent-induced loss of heterozygosity in Oryzias latipes.Genes to cells : devoted to molecular & cellular mechanisms · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 3 countries.

Igor B Rogozina National Center for Biotechnology Information, National Library of Medicine , National Institutes of Health , Bethesda , MD , USA.
Alexander Goncearencoa National Center for Biotechnology Information, National Library of Medicine , National Institutes of Health , Bethesda , MD , USA.
Artem G Ladab Department Microbiology and Molecular Genetics , University of California , Davis , CA , USA.
Subhajyoti Dec Rutgers Cancer Institute of New Jersey , Rutgers University , New Brunswick , NJ , USA.
Vyacheslav Yurchenkod Life Science Research Center , University of Ostrava, 71000 Ostrava , Czech Republic.
German Nudelmane Systems Biology Center , Icahn School of Medicine at Mount Sinai , New York , New York 10029 , USA.
Anna R Panchenkoa National Center for Biotechnology Information, National Library of Medicine , National Institutes of Health , Bethesda , MD , USA.
David N Cooperf Institute of Medical Genetics, School of Medicine , Cardiff University , UK.
Youri I Pavlovg Eppley Institute for Research in Cancer and Allied Diseases , University of Nebraska Medical Center , Omaha , NE 68198, USA.
National Institutes of Health · USCardiff University · GBIcahn School of Medicine at Mount Sinai · USRutgers, The State University of New Jersey · USUniversity of California, Davis · USUniversity of Nebraska Medical Center · USUniversity of Ostrava · CZ

Funding

TRANSCRIPTIONAL PROFILINGP30CA072720 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Tracie Saunders · 1997 to 2026
$94.5M
Protein-protein binding: regulation and effect of disease mutationsZIALM090313 · NLM · NATIONAL LIBRARY OF MEDICINE · PI PANCHENKO, ANNA · 2013 to 2018
$5.2M
NCI NIH HHS P30 CA072720
6 · The paper itself

Abstract

DNA polymerase (pol) η is a specialized error-prone polymerase with at least two quite different and contrasting cellular roles: to mitigate the genetic consequences of solar UV irradiation, and promote somatic hypermutation in the variable regions of immunoglobulin genes. Misregulation and mistargeting of pol η can compromise genome integrity. We explored whether the mutational signature of pol η could be found in datasets of human somatic mutations derived from normal and cancer cells. A substantial excess of single and tandem somatic mutations within known pol η mutable motifs was noted in skin cancer as well as in many other types of human cancer, suggesting that somatic mutations in A:T bases generated by DNA polymerase η are a common feature of tumorigenesis. Another peculiarity of pol ηmutational signatures, mutations in YCG motifs, led us to speculate that error-prone DNA synthesis opposite methylated CpG dinucleotides by misregulated pol η in tumors might constitute an additional mechanism of cytosine demethylation in this hypermutable dinucleotide.

Indexed as

Base SequenceDNA-Directed DNA PolymeraseExomeGene Expression Regulation, NeoplasticHumansMutationNeoplasmsSkinSkin NeoplasmsY-Family DNA PolymerasesDNA-Directed DNA PolymeraseRad30 proteinY-Family DNA PolymerasesDNA lesion bypassgene expression profilesHypermutationmutable motifPOLHskin cancersloppy DNA polymerase

Identifiers

PMID29139326
PMCPMC5914734
OpenAlexW2769836470

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.